Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40933
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.1  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.8  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.5  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +1

Query: 139  DAKPYRIIILRDFQEWKQDKCDVKGQPFCSLPNACPLTTESYQERHYVFSLVWSVLTT 312
            D K   + +  D    +  +C   G PFC     CP++ + +     VF   W    T
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQWKEALT 1693


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 59  DELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSSVTSKNGNKI 196
           D L + I++    ++     L+++I   QN  + S+S+T+ NGN I
Sbjct: 76  DVLGQLIKKYYSFDNSLKNELLELIDMPQNGDDSSTSITNGNGNTI 121


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  RIQR*INQVYRRNVGKERCILHFTNSGYSM 138
           R+ + +N    R    E+C+L  T  GYS+
Sbjct: 132 RLLQIVNNPSARKFSNEKCLLQLTRKGYSV 161


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 247 LTTESYQERHYVFSLVWSVLTTIHGSWILRAKDTTLRSD 363
           LT   Y++++ V     S  +    SW+ R+KD  LR+D
Sbjct: 194 LTVYIYKKKYCVIKFNKSGRSKKKDSWLKRSKDELLRTD 232


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +2

Query: 44   KKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSSVTSKNGNKINVT 205
            K EY DE      E LEKN +  TSL Q I  +Q+    SSS+  +N  K + T
Sbjct: 960  KTEY-DEYRLQTSESLEKNHLKITSLEQRIVILQDEI-ASSSLRCENITKDSET 1011


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,447
Number of Sequences: 5004
Number of extensions: 64826
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)