Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40932
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   110   2e-25
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    50   3e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.061
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   4.0  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   5.3  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 193
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+  L +L+A F    
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59

Query: 194 APDETYGRGRDWNVDLIPKF 253
              E+ GR RDW VDL+PKF
Sbjct: 60  QRPESLGRDRDWCVDLVPKF 79



 Score =  107 bits (258), Expect = 1e-24
 Identities = 49/91 (53%), Positives = 66/91 (72%)
 Frame = +3

Query: 510 NMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKSPYLL 689
           +M+S++ KFGL   TQDF GHA+ALYLDD YL++PA +T  RI LY+ S+AK+GKSPY+ 
Sbjct: 166 SMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIY 225

Query: 690 PIVWIGENFLKALLAFSAIYGGTYSWTKPID 782
           P+  +GE   +     SAIYGGTY   +P+D
Sbjct: 226 PLYGLGE-LPQGFARLSAIYGGTYMLNQPVD 255



 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 45/81 (55%), Positives = 62/81 (76%)
 Frame = +1

Query: 256 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 435
           MANG L  +LI+T VTRY+EFK I GSYVY+ G+I+KVP ++ EAL S LM +FEKRR +
Sbjct: 81  MANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAK 140

Query: 436 NFLIYVQDFQEEDAKTWKDFD 498
            FL +V +++E+D  T+KD +
Sbjct: 141 KFLEWVNNYREDDPSTYKDIN 161


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +2

Query: 29  YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 157
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLT 49



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 612 PAIQTIRRIKLYSDSLAKYGKSPYLLPIVWIGENFLKALLAFSAIYGGTYSWTKPID 782
           P    +  +  Y  S   YG   YLL +   G    +     SA+ GGT+   + ID
Sbjct: 225 PTKDALDTVLKYFHSFGMYGDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAID 281


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 23  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 124
           ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4   QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 253
           L  L  K  A AP +TY   + W    +PKF
Sbjct: 32  LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 84  CRFLGRRFCTSIAISTTVVNLRQL 155
           CR L R+F  ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 38  IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 145
           IV+G GL     +  +   G  VL +D+N  +GG S
Sbjct: 42  IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,278
Number of Sequences: 5004
Number of extensions: 78068
Number of successful extensions: 246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)