Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40932
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 534 TYRTATACFS*GIKILPCLGIFFLEIL 454
           T R  T  ++  I I+PC+GI FL +L
Sbjct: 239 TMRRKTLFYTVNI-IIPCMGISFLTVL 264


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 534 TYRTATACFS*GIKILPCLGIFFLEIL 454
           T R  T  ++  I I+PC+GI FL +L
Sbjct: 239 TMRRKTLFYTVNI-IIPCMGISFLTVL 264


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 ILPCLGIFFLEIL 454
           I+PC+GI FL +L
Sbjct: 248 IIPCMGISFLTVL 260


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 ILPCLGIFFLEIL 454
           I+PC+GI FL +L
Sbjct: 244 IIPCVGISFLSVL 256


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 ILPCLGIFFLEIL 454
           I+PC+GI FL +L
Sbjct: 257 IIPCVGITFLTVL 269


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 782 IYGFCPTIGSSIYSRKGEQSLEEVLPN 702
           I+ FC   GS +  R    SL  +LP+
Sbjct: 211 IFPFCIVFGSDMIVRSIGNSLMVILPD 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 153 LPR*RSCSLSSTHRH 197
           + R R  SLSSTH H
Sbjct: 633 MERERDASLSSTHSH 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,124
Number of Sequences: 438
Number of extensions: 5276
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)