Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40930
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 132 5e-32
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 124 1e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 76 5e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 3e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 3e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 6e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 48 1e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 3e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 46 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 6e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 9e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 3e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.001
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 36 0.003
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 36 0.005
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.006
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 34 0.014
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.018
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 33 0.024
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.17
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.23
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 1.6
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 2.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 3.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.7
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 4.9
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 4.9
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 4.9
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.9
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 132 bits (318), Expect = 5e-32
Identities = 60/78 (76%), Positives = 73/78 (93%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CH
Sbjct: 60 LAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECH 119
Query: 437 ACIGGTNVREDIRQLESG 490
ACIGGT VR+D+ L++G
Sbjct: 120 ACIGGTLVRDDMAALQAG 137
Score = 85.4 bits (202), Expect = 6e-18
Identities = 36/55 (65%), Positives = 48/55 (87%)
Frame = +3
Query: 93 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RD+
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDV 59
Score = 52.0 bits (119), Expect = 6e-08
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1
Query: 505 GPPGRVYDMITRRALHANTIKLFVLDEADEMLS 603
G PGRV+DMI RRAL + +++FVLDEADEMLS
Sbjct: 143 GTPGRVHDMIQRRALPTDAVQMFVLDEADEMLS 175
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 124 bits (299), Expect = 1e-29
Identities = 58/78 (74%), Positives = 68/78 (87%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
IAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CH
Sbjct: 62 IAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCH 121
Query: 437 ACIGGTNVREDIRQLESG 490
ACIGGT+V DI++L+ G
Sbjct: 122 ACIGGTSVGNDIKKLDYG 139
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +3
Query: 93 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRD+
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDV 61
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 505 GPPGRVYDMITRRALHANTIKLFVLDEADEMLS 603
G PGRV DMI RR L +K+ +LDEADE+L+
Sbjct: 145 GTPGRVTDMIRRRNLRTRNVKMLILDEADELLN 177
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 75.8 bits (178), Expect = 5e-15
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
+A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K
Sbjct: 85 LARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVM 144
Query: 437 ACIGGTNVREDIRQL 481
GGT +R+DI +L
Sbjct: 145 VTTGGTTLRDDIIRL 159
Score = 48.8 bits (111), Expect = 6e-07
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 45 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 212
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 213 IQQRAIMPCIQGRDL 257
IQ+ +I + GRD+
Sbjct: 70 IQEESIPIALSGRDI 84
Score = 31.5 bits (68), Expect = 0.098
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 505 GPPGRVYDMITRRALHANTIKLFVLDEADEMLS 603
G PGRV D+ + + FV+DEAD++LS
Sbjct: 168 GTPGRVLDLAGKGVADFSECTTFVMDEADKLLS 200
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 239 HPRTRFIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 418
+P I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
Query: 419 LNAK 430
K
Sbjct: 211 TEVK 214
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 132 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 230
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +1
Query: 505 GPPGRVYDMITRRALHANTIKLFVLDEADEML 600
G PG V D++ RR L A IK+FVLDEAD ML
Sbjct: 236 GTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 1e-08
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 48 IGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHA 107
Query: 437 ACIGGTN-VREDI 472
+GG + +R+ I
Sbjct: 108 LIVGGMDMIRQSI 120
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 511 PGRVYDMITRRALHA----NTIKLFVLDEADEMLS 603
PGR+ D+I IK V+DEAD +LS
Sbjct: 133 PGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 248 TRFIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 424
T + QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L +
Sbjct: 89 TDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPD 148
Query: 425 AKCHACIGGTNVREDI 472
+ GG N+++D+
Sbjct: 149 VRTAVFYGGINIKQDM 164
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/39 (51%), Positives = 22/39 (56%)
Frame = +3
Query: 141 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
F D LK ELLR I GFE PS +QQ I I G D+
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Score = 33.5 bits (73), Expect = 0.024
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 511 PGRVYDMITRRALHANTIKLFVLDEADEML 600
PGR+ ++ + L N++K FVLDE D++L
Sbjct: 181 PGRLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 53.2 bits (122), Expect = 3e-08
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
I AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + +
Sbjct: 87 IGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSV 146
Query: 437 ACIGGTNV 460
+GG ++
Sbjct: 147 VIVGGMDM 154
Score = 33.1 bits (72), Expect = 0.032
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +3
Query: 6 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 185
S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 4 SEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACE 62
Query: 186 AYGFEKPSAIQQRAIMPCIQGRDL 257
GF+ P+ IQQ AI + RD+
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDV 86
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 6e-07
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDH 418
+AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ +
Sbjct: 55 VAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL----EK 110
Query: 419 LNAKCHACIGGTNV 460
L A C I NV
Sbjct: 111 LTAFCSKHIRFINV 124
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 135 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
+TF D NL L R I+ FEKP+++Q I ++G+DL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDL 54
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAK 430
+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV + +
Sbjct: 110 VGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 431 CHACIGGTNVREDIRQL 481
A +GG ++ E L
Sbjct: 170 SVAIVGGVSLEEQFSLL 186
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 141 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
F M L + LLR I+ GF+ P+ IQ++ I ++GRD+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDV 109
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 427
+ A +G+GKTA F + IL+++ + + LIL PTRELA Q V + +
Sbjct: 300 VGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDI 359
Query: 428 KCHACIGGTNVREDIRQL 481
CIGG +++ ++L
Sbjct: 360 MVCLCIGGLSLKLQEQEL 377
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 138 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
+F MNL +L+G+ GFE P+ IQ + I + G+D+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDI 299
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 511 PGRVYD-MITRRALHANTIKLFVLDEADEML 600
PGR D M + I++ V+DEAD ML
Sbjct: 388 PGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.0 bits (104), Expect = 4e-06
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +2
Query: 245 RTRFIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVV 400
R I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 286 RKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEG 345
Query: 401 IALGDHLNAKCHACIGGTNVREDIRQLESG 490
+ L +C + +GG E Q+ G
Sbjct: 346 NKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 117 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
D + +++ L E+L+ + +++PS+IQ+ AI +Q +DL
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDL 289
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 511 PGRVYDMITRRALHANTIKLFVLDEADEML 600
PGR+ D + RR + V+DEAD ML
Sbjct: 383 PGRLLDCLERRLFVLSQCTYVVMDEADRML 412
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.6 bits (103), Expect = 6e-06
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 430
I +A +G+GKT F I IL+ + + QAL++APTRELA QI + + N +
Sbjct: 163 IGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIR 222
Query: 431 CHACIGGTNVREDIRQL 481
+ GG V++ R L
Sbjct: 223 VMSITGGLAVQKQQRLL 239
Score = 28.7 bits (61), Expect = 0.69
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 511 PGRVYDMITRRALHAN--TIKLFVLDEADEML 600
PGR++ +I L N IK VLDEAD +L
Sbjct: 250 PGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLN 424
+ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G +
Sbjct: 80 LGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHS 139
Query: 425 AKCHACIGGTNVREDIRQL 481
IGG N +E+ +L
Sbjct: 140 FSAGLIIGGNNYKEEKERL 158
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.5 bits (93), Expect = 9e-05
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Frame = +2
Query: 209 CNPATRNNALHPRTRFIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 367
C PA N + FI +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT--DDKDAFI-EAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 368 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESG 490
REL QQI V L + H C+ IGG + + ++ G
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKG 269
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
+E F D+ L E + + I GFE + IQ+R+I P + GRD+
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDV 129
Score = 35.5 bits (78), Expect = 0.006
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 IAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLN 424
+ A++G+GKT F +I +L + R +I++PTRELA QI V L + +
Sbjct: 130 LGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHH 189
Query: 425 AKCHACIGGTNVREDIRQLESG 490
IGG N R + +L G
Sbjct: 190 QTFGIVIGGANRRAEADKLVKG 211
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.001
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIQKVVIALGDHL 421
I A++G+GKT F + + + I ++ + A+I+ PTRELA QI + L
Sbjct: 459 IGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLL 518
Query: 422 NAKCHACIGGTNVREDIRQLESG 490
N + GG +++ I L+ G
Sbjct: 519 NIRACCAYGGAPIKDQIADLKRG 541
Score = 31.5 bits (68), Expect = 0.098
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 117 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
D + V ++ L + + I + G+EKP++IQ +AI GRD+
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDV 458
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQK 394
+A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 87 LACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 36.3 bits (80), Expect = 0.003
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 266 AQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 436
A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L N K
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAV 268
Query: 437 ACIGGTNVREDIR 475
GG E R
Sbjct: 269 VVYGGAPKSEQAR 281
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 505 GPPGRVYDMITRRALHANTIKLFVLDEADEML 600
G PGR+ D+I ++ + + VLDEAD ML
Sbjct: 291 GTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 490 CSCGGGPPGRVYDMITRRALHANTIKLFVLDEADEML 600
C PGR+ D+I R + IK VLDEAD ML
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRML 342
Score = 33.1 bits (72), Expect = 0.032
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTRELAQ 382
+A AQ+G+GKTA F IL Q R +A LILAPTREL
Sbjct: 210 MACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVC 269
Query: 383 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 490
QI + + A GG ++R IRQ++ G
Sbjct: 270 QIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 397
+ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 42 VVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 138 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDLSLKPSQELEKLLLSLYRFYN 317
+F +N+ + L + A GF+K + +Q AI ++ +DL ++ K L L ++
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 318 K 320
K
Sbjct: 62 K 62
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.3 bits (75), Expect = 0.014
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +2
Query: 257 IAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHL 421
+ QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 80 VVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGT 139
Query: 422 NAKCHACIGG-TNVRED 469
+ IGG + +RE+
Sbjct: 140 GIRVSYAIGGNSKMREE 156
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 511 PGRVYDMITR-RALHANTIKLFVLDEADEML 600
PGR+ D + R L + + F+LDEAD ++
Sbjct: 171 PGRLEDHLQNPRILESLSTDSFILDEADRLM 201
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 AQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 442
A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K + A
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAW 239
Query: 443 IGGTNVREDIRQL 481
G ++R + QL
Sbjct: 240 TGQKSLRHETYQL 252
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 33.5 bits (73), Expect = 0.024
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 132 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
V TF++ +L+ + GFE P+ IQQ+A + GRD+
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDM 162
Score = 32.3 bits (70), Expect = 0.056
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 272 SGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCH 436
+G+GKT ++ + + I+ L+LAPTRELA QIQ+ G +
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 437 ACIGGTNVREDIRQLESG 490
GG IR L G
Sbjct: 228 CVYGGVPRGPQIRDLIRG 245
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 511 PGRVYDMITRRALHANTIKLFVLDEADEML 600
PGR+ DM+ + + VLDEAD ML
Sbjct: 253 PGRLLDMLDSNKTNLRRVTYLVLDEADRML 282
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 200 KTFCNPATRNNALHPRTRFIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 379
KT+ + A N L I + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 380 QQIQKVVI 403
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 108 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDLS 260
LDT+W V + NL+ + + I + F PS I + MP + R+ S
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRNSS 234
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 105 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 197
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 517 DLEAHHHMNTTLQLANIFTDIGATNASMAFSIQVITKSYHHLL 389
DLE H+N L +A I A +A+ + SI + K+ HLL
Sbjct: 225 DLENLSHVNVLLDIALDKFRIEALHANFSVSISLRNKAIQHLL 267
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 275 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 391
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 307 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 408
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 82 DLREWTLGHLTPT 120
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 517 RVYDMITRRALHANTIKLFVLDEADEM 597
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 421 QVITKSYHHLLNLLGQLSCGSQDQ 350
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 111 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDLS 260
DTDWD +V + D++L+ RGI A G + + + P + + ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMN 663
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 386 IQKVVIALGDHLNAKCHACIGGTNVRED 469
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 481 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 380
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 241 SKDAIYRSSPVRNWKNCYFLYIDSTTNRYKHS*MSSFDPG-SHKRAGPTNSEG 396
S+ A Y S+P +KN IDS + R+ HS SF P SH + + +G
Sbjct: 128 SEKASYTSTP---YKNVAPKVIDSPSARHMHSNSPSFPPSQSHTSSYDQSPKG 177
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 102 QGPFPEVHRNYLDPSMAHFWNPLANL 25
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,588
Number of Sequences: 5004
Number of extensions: 55153
Number of successful extensions: 230
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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