Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40930
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       42   5e-06
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.00 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
 Frame = +2

Query: 257 IAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIAL 409
           +A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI + ++  
Sbjct: 237 MACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKF 296

Query: 410 GDHLNAKCHACIGGTNVREDIRQLESG 490
             +   K     GGT+V     +L +G
Sbjct: 297 SLNSILKTVVAYGGTSVMHQRGKLSAG 323



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 126 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDL 257
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRDL
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDL 236



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 511 PGRVYDMITRRALHANTIKLFVLDEADEML 600
           PGR+ D + +  +  ++++  VLDEAD ML
Sbjct: 331 PGRLLDFVEKGRVKFSSVQFLVLDEADRML 360


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +2

Query: 155 PQRRIVERHIRLWF*KTFC----NPATRNNAL-HPRTRFIAQAQSGTGKTATFSISILQQ 319
           P +++    I  WF  TFC    N AT  NA+ H  +      +    K A +++  ++ 
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEF 580

Query: 320 ID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 460
                 R C      P++  +  +       GD LNA   A +G +N+
Sbjct: 581 YKRRPQRACSTTGGVPSK--SPTLTHSPTMYGDALNANLQAALGDSNM 626


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SQELEKLLLSLYRFYNKSIQAFVNV 344
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 461 GHWCHQCKHGI*HSS 417
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 439 LHWWHQCP 462
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 597 HFISFIKNKKFDGVGMKRTTSYHIIY 520
           H I+ I +K F GVG+    S+  I+
Sbjct: 126 HLINQIPDKSFPGVGVIDFESWRPIF 151


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 309 IDIEKVAVFPVPDWA*AINRVLGCKALLRVAGL 211
           ID+ K  +  + DW   +N +   K L+RV  +
Sbjct: 371 IDLRKKQLKSLEDWENEMNIITKGKPLIRVENI 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,490
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)