Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40929
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   7.2  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   7.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.5  

>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 401 IPKLRSFIYRLSTTKSAGSPSLVHNKLIQS 312
           +P + +FI    TTK   SP+   NKL+Q+
Sbjct: 83  VPLISTFIPIFGTTKRVLSPADTANKLVQN 112


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 484 NKNNNFGFPLIDVSPVGRISF--VCFKFI 404
           NK+N F + L D+ P  +I++   C  FI
Sbjct: 77  NKDNEFWYALKDIKPADKINYKEFCIMFI 105


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 304 SILSLSHLNVCN*K*DINVPKKDRR*QIPNPELLNFIIISRSRSDKGDQCPNSRSPL 134
           S +SLS LN  N   DI     DR   +  P+LL    ++  RS +  + P + SP+
Sbjct: 178 SSVSLSALNNYNKTTDIKARSLDRLSDMTRPKLL----LNTKRSHRSSEEPGASSPV 230


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 554 PKLAKSVQPFSSFSETNEQQFIF 622
           P+L +S++P+ S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,815
Number of Sequences: 5004
Number of extensions: 62936
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)