Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40926
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    28   0.073
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.39 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 0.073
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 564 RPSPRAGPRSADAASGCRRERLNEFLNSVRRQLITAG 454
           RPS  A P S    SG  R      +N V R+  TAG
Sbjct: 270 RPSDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAG 306


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 229 QIPPSYLLIKKNGDFEKYLEDLKPVAKTY 315
           + PPSY  +  N + E++ +   PVA  Y
Sbjct: 537 ETPPSYNQLNYNENIERFFKSKPPVATMY 565


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 385 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 504
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 385 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 504
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 35  EKVIKELEAEDEDVVLFKNFEEKRVKYEDEEITEDLLNAWVFVQSMPTIVEFSHETASKI 214
           E ++K+    DE+     NF EK  +   + + +D     + V+  P      H   SKI
Sbjct: 64  ECMMKKFNVVDEN----GNFNEKNTRDIVQAVLDDNETDQLIVECSPISDANVHIKISKI 119

Query: 215 FGGKIKY 235
           F   +KY
Sbjct: 120 FQCFMKY 126


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 378 LQDPLVFIFVGIDGDG 331
           LQ+P  +I+  + GDG
Sbjct: 168 LQEPSFYIYPSLQGDG 183


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 378 LQDPLVFIFVGIDGDG 331
           LQ+P  +I+  + GDG
Sbjct: 168 LQEPSFYIYPSLQGDG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,292
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)