Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40922
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    37   0.003
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   9.4  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   9.4  

>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 308 RSWFIGETVKSDPSMQILTPINPLFLILPKVKSQCTSK 421
           RSWF+G+ V SD  + + TPI+ L L+LP ++    S+
Sbjct: 51  RSWFVGDHVVSDGYLYVCTPIDLLALVLPIIQELTWSR 88



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 NFRFINLSHPATGKITKY 251
           N +F+ LSHP TG+  +Y
Sbjct: 14  NQQFVELSHPLTGRPLRY 31


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 320 IGETVKSDPSMQILTPINPLFLILPKVK 403
           I +    DPSMQ+  P  PL+L   ++K
Sbjct: 77  IAKVTIRDPSMQVQRPYTPLYLDANELK 104


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 646 FVSSNLNNGEIEEEFYLKYAHGLLSEYLQEEFVQNLEKR*IL 771
           F S++  NG + E   L+ AHG+ ++    +   +LE+R ++
Sbjct: 251 FTSTSAANGSVNENQLLQAAHGIANDVCARD--MSLEERAVM 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,510
Number of Sequences: 5004
Number of extensions: 63496
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)