Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40922
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 354 CILGSDFTVSPINHDRCGSLYV 289
           CI+G D+++  +NH +   + +
Sbjct: 477 CIIGKDYSLPMVNHSKSSRINI 498


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 580 RNLAKVLKEKNLHVTAGAVSATFV 651
           R LAK  KEK    T G V   F+
Sbjct: 322 RKLAKFAKEKKAAKTLGIVMGVFI 345


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 458 IPCQIVNPPKVLLY*CIDSSLLEVLKIM 375
           +P    NPP +LLY   DS  L V  ++
Sbjct: 305 LPHNSTNPPNILLY-YRDSLALSVFALI 331


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 437 DLLSDKGYDQIVNTVKDLEKI 499
           D+   K  D I  T+KDLE +
Sbjct: 83  DISDFKDVDPIFGTIKDLEDL 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,577
Number of Sequences: 438
Number of extensions: 4222
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)