Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40920
(774 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 39 4e-05
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 26 0.45
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 0.59
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 24 1.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.5
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 9.6
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 9.6
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 39.1 bits (87), Expect = 4e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 FSLCDVLRNLDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEVLNIS 435
F C L+ LDLS N+L+ +PD L L LK L+L N++ S NL +L L +
Sbjct: 427 FRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLI 486
Query: 436 NNFVQTL 456
N + L
Sbjct: 487 GNDIGNL 493
Score = 38.3 bits (85), Expect = 8e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 250 HRVFSLCDVLRNLDLSKNKLSVLPD-DLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEV 423
+R F+ + L+ L L N++ L + +L HL++L L +N + + + + L+ LE+
Sbjct: 835 NRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEI 894
Query: 424 LNISNNFVQTLPVCLKNLN 480
L +S N + T PV LN
Sbjct: 895 LRLSGNRLVTFPVWQVTLN 913
Score = 32.7 bits (71), Expect = 0.004
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 LSVLPDDLSKLKHLKQLNLDSNKLQALP-ESLINLKKLEVLNISNN 441
L + PD L+ L L + + +QALP SL +L L+ LN++ N
Sbjct: 136 LELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTEN 181
Score = 30.3 bits (65), Expect = 0.021
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 367 SNKLQALPESLINLKKLEVLNISNNFVQTLPV-CLKNLNNLK 489
S L+ P+S + L++L L I + VQ LPV L +L+NL+
Sbjct: 133 SRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQ 174
Score = 26.6 bits (56), Expect = 0.26
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 537 LGLQSLDVLDLSHNKITEIPYGM-SELYVIE-LNLSQNEISLI 659
LGL L VL+LS+N +T I M +L+ ++ L+L N I I
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRI 374
Score = 25.4 bits (53), Expect = 0.59
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 277 LRNLDLSKNKLS-VLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQ 450
L+ L+L++NK+ V + L+ + LD N L + ++ L +LN+S N ++
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562
Score = 23.4 bits (48), Expect = 2.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 561 LDLSHNKITEI-PYGMSELYVIELNLSQNEISLI 659
LD SHN+ITE+ P + + + L ++ N I+L+
Sbjct: 600 LDASHNRITELSPLSVPDSVEL-LFINNNYINLV 632
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 25.8 bits (54), Expect = 0.45
Identities = 15/72 (20%), Positives = 36/72 (50%)
Frame = -3
Query: 448 VQSCLIYLKLQVFLSL*VIQVKLEVYYYLNLIVSGVLICLNRQVKQKVCFLTDLDFVAHH 269
V LI+LK ++ + ++ + + Y+ L+ G+++ R+ QK+ + ++
Sbjct: 104 VTKYLIHLK-EIEDTEPILLIAYIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNGNN 162
Query: 268 IN*IRDGNFFKL 233
I ++ N F+L
Sbjct: 163 ITNFKNSNIFQL 174
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 25.4 bits (53), Expect = 0.59
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 323 SGKTESLFFDRSRFRSTSHKLNTRWEF 243
SG+ ++F D+ F + N++W+F
Sbjct: 193 SGEEVNIFLDKKGFHMDGYTNNSKWDF 219
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 457 PVCLKNLNNLKQVYASNINYRLFRNKY 537
P + N N+L Y N NY + N Y
Sbjct: 79 PKIISNNNSLSNNYNYNNNYNNYNNNY 105
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 394 IQVKLE-VYYYLNLIVSGVLI 335
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 397 VIQVKLEVYYYLNLIVSGVLI 335
VI + +YY+ NLIV VLI
Sbjct: 225 VIIRRRTLYYFFNLIVPCVLI 245
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 570 SHNKITEIPYGMSELYVIE 626
SH+K+ EIP + Y I+
Sbjct: 526 SHHKLIEIPEDLKYFYEID 544
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 570 SHNKITEIPYGMSELYVIE 626
SH+K+ EIP + Y I+
Sbjct: 526 SHHKLIEIPEDLKYFYEID 544
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,345
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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