Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40918
         (574 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071958-1|AAH71958.1|  516|Homo sapiens nucleolar complex assoc...    31   3.8  
BC007893-1|AAH07893.2|  494|Homo sapiens NOC4L protein protein.        31   3.8  
BC001191-1|AAH01191.1|  516|Homo sapiens nucleolar complex assoc...    31   3.8  

>BC071958-1|AAH71958.1|  516|Homo sapiens nucleolar complex
           associated 4 homolog (S. cerevisiae) protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 469 PHYKMVLLTSTLHIGYAKSYHR*NNIFFLHYKHNCQSPVFYR 344
           P   +  LT    +G A S    N +F L +KHN + P FYR
Sbjct: 287 PTLMIDFLTRACDLGGALSLLALNGLFILIHKHNLEYPDFYR 328


>BC007893-1|AAH07893.2|  494|Homo sapiens NOC4L protein protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 469 PHYKMVLLTSTLHIGYAKSYHR*NNIFFLHYKHNCQSPVFYR 344
           P   +  LT    +G A S    N +F L +KHN + P FYR
Sbjct: 265 PTLMIDFLTRACDLGGALSLLALNGLFILIHKHNLEYPDFYR 306


>BC001191-1|AAH01191.1|  516|Homo sapiens nucleolar complex
           associated 4 homolog (S. cerevisiae) protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 469 PHYKMVLLTSTLHIGYAKSYHR*NNIFFLHYKHNCQSPVFYR 344
           P   +  LT    +G A S    N +F L +KHN + P FYR
Sbjct: 287 PTLMIDFLTRACDLGGALSLLALNGLFILIHKHNLEYPDFYR 328


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,928,420
Number of Sequences: 237096
Number of extensions: 1767102
Number of successful extensions: 2125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)