Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40912
         (733 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK098777-1|BAC05410.1|  554|Homo sapiens protein ( Homo sapiens ...    31   4.3  
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase...    30   9.8  
U75308-1|AAC50901.1|  947|Homo sapiens TBP-associated factor pro...    30   9.8  
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   9.8  
AL137077-3|CAI11046.1|  949|Homo sapiens TAF4 RNA polymerase II,...    30   9.8  
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   9.8  
AL109911-3|CAI19183.1|  949|Homo sapiens TAF4 RNA polymerase II,...    30   9.8  
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   9.8  

>AK098777-1|BAC05410.1|  554|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25911 fis, clone CBR04744. ).
          Length = 554

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 245 DPTGLRPWAPALYST 289
           DP GL PWAP LY+T
Sbjct: 531 DPAGLGPWAPGLYNT 545


>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
           transcription factor protein.
          Length = 1083

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 172 PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 228


>U75308-1|AAC50901.1|  947|Homo sapiens TBP-associated factor
           protein.
          Length = 947

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 68  PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 124


>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 230


>AL137077-3|CAI11046.1|  949|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 70  PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 126


>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 230


>AL109911-3|CAI19183.1|  949|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 70  PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 126


>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRASPLGPGSVLHELSASTGLI*NTRHEE----NQLQVVPSVTFPLPK 381
           P P PG   GP    P GPG+    L+ S  L+ N+ H      + +   P+   PLPK
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAA-QTLNGSAALL-NSHHAAAPAVSLVNNGPAALLPLPK 230


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,458,423
Number of Sequences: 237096
Number of extensions: 1653596
Number of successful extensions: 4834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4823
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)