Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40912
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 545 TPQCLVEEHQKLRN 504
           TPQ   E H+KLRN
Sbjct: 176 TPQQAQEVHEKLRN 189


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 217 PYPPPGFSSGPHRA 258
           P PPP  SSGP  A
Sbjct: 343 PPPPPPSSSGPDSA 356


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 405 NSNCVSHTPRGGSHSDEDRKLTPLDDDMRSDTSV-PQLLMLLDQALRSYLLK 557
           N NC   T       DE  +L  LD+ +  +TSV P  +++ D    S LLK
Sbjct: 116 NQNCSGITSVYRIAIDEWDRLWVLDNGISGETSVCPSQIVVFD-LKNSKLLK 166


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 330 VPCILYQPSTGRKFVEYRAGAQGR 259
           +PC+L +P +   F       +GR
Sbjct: 626 LPCLLPRPKSENNFASQELSREGR 649


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 330 VPCILYQPSTGRKFVEYRAGAQGR 259
           +PC+L +P +   F       +GR
Sbjct: 594 LPCLLPRPKSENNFASQELSREGR 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,917
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)