Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40909
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...   103   2e-23
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   1.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   1.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   7.3  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   9.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score =  103 bits (246), Expect = 2e-23
 Identities = 42/86 (48%), Positives = 60/86 (69%)
 Frame = +3

Query: 252 QHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISNIP 431
           +HL+ D+  +MPH K +SK++    LY +NE++E+ NCN    FE R+  DLY+ I+  P
Sbjct: 58  RHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAP 117

Query: 432 NGPSAKFLVENIYTMGELKMTGNCLR 509
           NGP+ KF VEN++TM EL MTGN L+
Sbjct: 118 NGPTVKFHVENLHTMDELNMTGNALK 143


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 375 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 497
           +L E RK  +  + + ++PNGPS  F + N+ T  E+   G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 430 GILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLL 314
           GIL   +YK  + L + +M L  FF S++ + T+  +++
Sbjct: 134 GILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +3

Query: 201 KQTEGTRLCDERYQSSSQHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 380
           K  E  RL +ER  +++   ++DI   +   K++     S+N  ++NE+ +M+N  + + 
Sbjct: 232 KDHEILRLKEER--TAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLE 289

Query: 381 FEGRKMRDLYMWISN 425
            E     D Y  I N
Sbjct: 290 QELYAFEDDYSRIQN 304


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 406 CICGYLIYQMDQVLNFWW 459
           C+ GY IY+   V+N  W
Sbjct: 190 CLIGYFIYRGGNVMNLQW 207


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 170 LDIRTGGXGTFSSLVTGSVIRCFTLEGFL 84
           L+I  GG GTFSSL+    +   TL+  L
Sbjct: 302 LNIPNGGIGTFSSLLIKGTMGYDTLQTLL 330


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 412 IYKSLIFLPSNKMHLLQFFISLIS---LTTYKFLLLSIL 305
           +YK L+F P     LLQ+ I+  S   +T   + LL++L
Sbjct: 342 LYKYLLFSPKFPKSLLQYVITFFSKPNITEENYNLLTLL 380


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 509  PQTIASHFQFPHSINVFHQ 453
            P +  SHF  PH I++++Q
Sbjct: 1047 PSSFVSHFLDPHGISLYNQ 1065


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 258 LMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILF 383
           + E++  L P+  + + +E +   Y +NE       ++C+ F
Sbjct: 731 MTENLLSLSPNLTSVNSLETAMTRYNINEDQRNSEASRCVYF 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,857
Number of Sequences: 5004
Number of extensions: 48587
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)