Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40909
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054... 101 5e-22
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 31 0.61
05_01_0206 + 1487034-1489430 31 0.80
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 31 0.80
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 30 1.4
02_04_0270 - 21439788-21441680 29 1.8
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139... 27 7.5
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 27 9.9
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027 27 9.9
>02_04_0434 -
22904790-22904927,22905220-22905318,22905404-22905472,
22905582-22905683,22905750-22905824,22906293-22906417,
22906511-22906589,22906933-22907074,22907200-22907441
Length = 356
Score = 101 bits (241), Expect = 5e-22
Identities = 43/96 (44%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +3
Query: 225 CDERYQSSSQHLMEDIKKLMPHHKTESKMERSKNL-YVVNEISEMKNCNKCILFEGRKMR 401
C R +HLM+++ L+PH K +SK+E ++ +NE+ E++NC+ C+ FE RK +
Sbjct: 74 CSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCLFFECRKQK 133
Query: 402 DLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLR 509
DLY+W+ P GPS KFLV ++TM ELK+TGN L+
Sbjct: 134 DLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLK 169
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 31.1 bits (67), Expect = 0.61
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 201 KQTEGTRLCDERYQSSSQHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 380
K TE +R Q ++ED+K + H K + N+ +V+E+ E+K +L
Sbjct: 238 KLTEEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLL 297
Query: 381 FE---GRKMRDL 407
E RK R+L
Sbjct: 298 QEYDNERKTREL 309
>05_01_0206 + 1487034-1489430
Length = 798
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 145 PXPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHS 255
P P S P+P W R ++L+ A RGI++ HS
Sbjct: 563 PKPNGSSSPSPSPVATSWKLRIKILLDASRGIDYLHS 599
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 258 LMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFE---GRKMRDLYMWISN 425
++ED+K + H K + NL +VNE+ E K K +L E RK R+L + N
Sbjct: 274 ILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNERKARELTEEVCN 332
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/99 (24%), Positives = 45/99 (45%)
Frame = +3
Query: 240 QSSSQHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWI 419
Q +S +L E + + H E K E L V + N + CI G+K+ + WI
Sbjct: 701 QENSSYLYE-VDGAIAHSDVEKKQE---TLSPVTTVDACTNIDLCISKTGKKLFSIGCWI 756
Query: 420 SNIPNGPSAKFLVENIYTMGELKMTGNCLRDLGLCYLSI 536
+ P G S + + + ++ N L++ GL ++++
Sbjct: 757 QD-PCGTSEGLKTDLVAVLSRIE---NQLKEEGLGWMNV 791
>02_04_0270 - 21439788-21441680
Length = 630
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 228 DERYQSSSQHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 368
D+ + S+S M+ KLMP KT++++ RS+N E+ M N N
Sbjct: 421 DDEFGSNSDSGMDH--KLMPKWKTQNRLNRSENGRDRPELKYMANTN 465
>12_01_0189 +
1397068-1397241,1397713-1397804,1398456-1398546,
1398931-1399052,1399142-1399289,1399596-1399665,
1400465-1400517,1400678-1400822,1401308-1401426,
1401480-1401527,1401528-1401599,1401902-1402024,
1402025-1402131,1402437-1402547,1402585-1402777,
1402959-1403129,1403548-1403673
Length = 654
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 294 YDVALIS*YLPLNAVTMIDTSHRKDEYPLSVYPFHLFGCR-ITRHS 160
YD A+ Y + ++ D S R ++P +Y FH F C I HS
Sbjct: 305 YD-AIRKAYPDIQMISNCDGSSRPLDHPADLYDFHTFHCAFIKMHS 349
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 70 AMVKVKKPSKVKQRITEPVTKDENVPXPPVRMSSDPAPKQVK 195
A++ V+ P+ + EP K+ P PP + P PK V+
Sbjct: 207 AVIIVEPPAPAPEPEPEPPKKEPPPPPPPKQEPCPPPPKVVE 248
>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
Length = 635
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 439 GPFGILDIHIYKSLIFLPSNK 377
G F IL H YK +IFL NK
Sbjct: 404 GYFSILGFHPYKEVIFLNQNK 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,893
Number of Sequences: 37544
Number of extensions: 285579
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -