Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40909
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.88 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.88 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 466 MFSTKNLALGPFGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 311
           +F T NL +   GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 241 LFYTVNLIIPCMGISFLTVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 290


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 466 MFSTKNLALGPFGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 311
           +F T NL +   GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 237 LFYTVNLIIPCVGISFLSVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 286


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 497 ASHFQFPHSINVFHQKFSTWS 435
           A H + P++   FH K   W+
Sbjct: 788 AGHVRLPYTFEQFHNKELLWT 808


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 497 ASHFQFPHSINVFHQKFSTWS 435
           A H + P++   FH K   W+
Sbjct: 826 AGHVRLPYTFEQFHNKELLWT 846


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 414 WISNIPNGPSAKFLVEN 464
           W++N+PNG    ++  N
Sbjct: 336 WVANVPNGSVTNWVSGN 352


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 181 PKQVKWINRQR 213
           P+ +KW NR+R
Sbjct: 475 PRYIKWTNRER 485


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 112 ITEPVTKDENVPXPPVRMSSDPA 180
           I EPV +  + P P  R++S P+
Sbjct: 500 IHEPVVETNSSPSPNPRIASAPS 522


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 382 NKMHLLQFFISLISLTTYKFLL 317
           N  + L +FI  I L TY F L
Sbjct: 215 NLENKLNYFIEDIGLNTYYFFL 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,122
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)