Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40908
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    27   3.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   3.9  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   3.9  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    26   3.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.8  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   9.0  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   9.0  

>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 371 VKVASDYEGTKKLKMPR-KAKVAGKXDLVNRMKKYREKLDHLIE 499
           VK A D E    L +P  ++   GK  L+N  +K R++L+HL++
Sbjct: 51  VKTAKDCENIDGLIIPGGESTTIGK--LINIDEKLRDRLEHLVD 92


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 516 EEGEIETDYGPRHDDLYARGHDSAQFVRLPLPQP 617
           E+    T+Y P H +   R    AQ +  P+P+P
Sbjct: 836 EDSSFNTEYFPAHSEAERRLSFFAQSLATPIPEP 869


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 528 IETDYGPRHDDLYARGHDSAQFVRLPLPQ 614
           ++TD+ P HD + A G D ++ +   +P+
Sbjct: 85  LDTDWNPFHDQVLASGGDDSKIMIWKVPE 113


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 51  KEVYSEMLMDCFGLLLSNLDGDNKESCICATCVVRLRDAYAFRQQVLQCEEAFLNAKLQS 230
           + +  E+  D    L    +  +KE C  A C     D Y  +Q  +  + AF +AK  +
Sbjct: 24  QNINEEVKRDIQNPLSYKTETSDKELCQTAACATSCSDWYPQQQTHMPHQNAFDSAKATA 83

Query: 231 K 233
           K
Sbjct: 84  K 84


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 421 PRHFQLLRAFVVARDFDVLNVGRLQVXITVHIA 323
           P ++++L++    R+FDVL++  LQ  I + ++
Sbjct: 150 PYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLS 182


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 LKPPDIKDVKVASDYEGTKKLKMPRKAKVAGK 442
           L+PP  KD+ +     GTKK    +K   A K
Sbjct: 15  LEPPSFKDLLIPIPNSGTKKKNKKKKKPKAKK 46


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 493 DRTGKMLQRKEKSKPIMDHDTMIYMHAVTIVHNSYVCPFHNRISIY 630
           D  GK+  RK+  + +  HD + Y   V     S V  F  R++ +
Sbjct: 590 DSIGKVFNRKDAIERLKRHDILFYGPVVADKAKSGVSGFLRRVASF 635


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 3   IKKCRLLTSEYEWMGQKEVYSEMLMDCFGLLLSNLDGD 116
           IKK   L    E +G +EV + + + C   LL NL+GD
Sbjct: 321 IKKEHWLPEYIEKLGFEEVEARLELLCREELLYNLEGD 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,845
Number of Sequences: 5004
Number of extensions: 41165
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)