Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40907
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    28   1.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   3.0  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.0  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    27   3.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   6.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.1  

>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 525 RDGTQRSVSGTTRSETANGSLEAKEEAN*EIKSDCE 632
           ++  +  VS ++  E +  SLE K+EAN ++  D E
Sbjct: 306 KEEEENKVSSSSNIEASQSSLEVKDEANRKVDDDDE 341


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 518 ALQRWHAAVSKRNYSKRNSERI 583
           +++RW + ++ RN SKRN+ RI
Sbjct: 26  SVKRWQSQLTFRNKSKRNTNRI 47


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 559 VVPLTDRCVPSLQRFYSDTT-SLKLSRIFHTFLVLCFRYLTIDGVVLPQHSRSFDIRSTI 383
           ++ + + CVPSL     +TT   K+  I    + +C     +  +   +H R F  R T 
Sbjct: 321 IIRICESCVPSLLHLQENTTLRSKVQDILLRIISVCGTKSLLRNLTNAKHLRIFCERLTK 380

Query: 382 RRLMAFL 362
            +L  FL
Sbjct: 381 SQLAMFL 387


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 368 RHQSPNSRTNIEGPRMLGKYNAIY 439
           R +  ++ +N+ GP+ +GK+N IY
Sbjct: 232 RKEYDSTVSNVNGPQFIGKWNIIY 255


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 535  VPSLQRFYSDTTSLKLSRIFHTF 467
            + SLQRF +DT    L RIF TF
Sbjct: 957  IMSLQRFTADTVYGYLMRIFGTF 979


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 263 IYYFISLVQTFSVMTDLVSLTLFNSSNKISFNYHNYVNKNTRNVIEHCMVEF--HCFVTS 90
           +++ I++V   S + D  SLT    +    F+Y NYV   T NV  +C  +   +  V  
Sbjct: 234 LFHRINIVYFRSSIYDEQSLTSLILARLNKFSYPNYVLSRTSNVF-NCRAQCLEYVEVLE 292

Query: 89  LSFNVI 72
           LS N++
Sbjct: 293 LSKNLV 298


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 571  VSLRVVPLTDRCVPSLQRFYSDTTSLKLSRIFHTFLVLCFRYLTIDGVVL 422
            ++LR+V      +P      S  T++  S +   FL+ CF+Y+ I GVVL
Sbjct: 1155 ITLRIVRREPWYIPPPAN--SSDTNITNSDVTALFLISCFQYIFI-GVVL 1201


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +1

Query: 34  MVIALLILVISIPITLKLKD 93
           +V+ +LI++ ++P+TLK+ D
Sbjct: 664 LVLQVLIIMATVPVTLKIAD 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,857
Number of Sequences: 5004
Number of extensions: 51111
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)