Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40902
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    40   3e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.003
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.003
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    37   0.004
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.9  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.0  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +3

Query: 72  KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAA 245
           K  + PKR MSA+M +    RE++K++NP     ++    G+ WK +   ++  +E+KA 
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query: 246 KAKSNMQK 269
           + K   ++
Sbjct: 71  QDKERYER 78


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 54  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 209
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 54  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 209
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
 Frame = +3

Query: 60  RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR---VTEIAKKGGEIWKSMK--DKT 224
           ++K +   +PKRP SAY L+  + R +IK E+ G +   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 225 EWEQKAAKAK 254
            +E++A+K +
Sbjct: 167 TYEEEASKLR 176


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 748 LRNLDPSVRQNFPNSASYFISIITNTTISRKIKGILNQEMNYLIAFYKQNTSCS*R*FQL 569
           L++++ S R    +  S F+ I T +     I  +LNQ  N+L++    N S     FQL
Sbjct: 108 LQHVEKSARIETYSKLSSFLKIYTPSLPEDPIFPLLNQLCNFLLSDRCSNNSEGSPDFQL 167

Query: 568 SLNVNQ 551
           +   N+
Sbjct: 168 NTQANK 173


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 130 ALFNHSMYADIGRFGLSVILTFFLMAKILK*FLNW 26
           A+++H  Y D+  FGL+    F +M  +   FL+W
Sbjct: 62  AVYHHVGYKDVSTFGLA--YGFLIMMSLRTCFLSW 94


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 745 RNLDPSVRQNFPNSASY 695
           +NL+P ++++FPN+ S+
Sbjct: 58  KNLNPQIKKHFPNTTSF 74


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 171  TEIAKKGGEIWKSMKDKTEWEQKAAKAKSNMQKT*NL 281
            +E+ KK  E+    K+ TE+  +  KA  N +KT N+
Sbjct: 1060 SELNKKEAELVIFQKEITEYRDQLHKAFQNPEKTHNI 1096


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,730
Number of Sequences: 5004
Number of extensions: 43320
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)