Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40902
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 63 2e-10
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 61 7e-10
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 61 7e-10
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 59 3e-09
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 48 1e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 43 2e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 42 4e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 42 4e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 42 4e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 42 4e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 42 4e-04
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 42 5e-04
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 42 5e-04
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 42 5e-04
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 42 5e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 37 0.018
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 35 0.073
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 35 0.073
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 35 0.073
Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 31 1.2
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 31 1.2
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 31 1.2
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 31 1.2
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 30 1.6
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 30 1.6
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 30 1.6
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 29 3.6
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 63 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 236
KK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +WE+
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 237 KAAKAKSNMQK 269
KA + KS +K
Sbjct: 606 KAEEDKSRYEK 616
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +3
Query: 66 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAA 245
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 246 KAKSNMQ 266
K +
Sbjct: 79 DDKKRYE 85
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +3
Query: 66 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAA 245
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 246 KAKSNMQ 266
K +
Sbjct: 79 DDKKRYE 85
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 63 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 236
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 237 KAAKAKSNMQ 266
KAA+ K+ +
Sbjct: 611 KAAQDKARYE 620
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +3
Query: 72 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 221
K D+ KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 81 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 221
D KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 72 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 221
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 230
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 228
Query: 231 EQKAAKAKSNMQK 269
E+++ +K +M++
Sbjct: 229 EEQSRLSKLHMEQ 241
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 230
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 225
Query: 231 EQKAAKAKSNMQK 269
E+++ +K +M++
Sbjct: 226 EEQSRLSKLHMEQ 238
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 230
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 331
Query: 231 EQKAAKAKSNMQK 269
E+++ +K +M++
Sbjct: 332 EEQSRLSKLHMEQ 344
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 230
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 231 EQKAAKAKSNMQK 269
E+++ +K +M++
Sbjct: 380 EEQSRLSKLHMEQ 392
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 60 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE---W 230
R + K + KRPM+A+M+W R +I P + + I+K G WK M + + +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 231 EQKAAKAKSNMQK 269
E+++ +K +M++
Sbjct: 380 EEQSRLSKLHMEQ 392
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 230
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 183
Query: 231 EQKAAKAK 254
EQKA K
Sbjct: 184 EQKAQADK 191
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 102 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 218
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 230
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 182
Query: 231 EQKAAKAK 254
EQKA K
Sbjct: 183 EQKAQADK 190
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 102 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 218
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 230
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 231 EQKAAKAK 254
EQKA K
Sbjct: 185 EQKAQADK 192
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 102 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 218
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 230
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 231 EQKAAKAK 254
EQKA K
Sbjct: 185 EQKAQADK 192
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 102 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 218
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 87 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKAAKAKSN 260
P+RP+ YM + ++++ENP ++ +I K G+ W + D K+ ++ + K++
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 261 MQK 269
+K
Sbjct: 86 YEK 88
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 75 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 242
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 1502
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 75 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 242
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 1502
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 75 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKA 242
MT K + S Y+L+ R++I ENP E++K G WK + + K +E +A
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRA 132
>Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical
protein F26D2.4 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 757 FLRLRNLDPSVRQNFPNSASYFISIITNTTISRKIKGILNQEMNYLIAF 611
F L + P + F N +Y + +T+ SRKIK ++ +NYL+AF
Sbjct: 103 FTSLYLVTPGIILFFENRYNYLVRT-DSTSQSRKIKRVIQHFINYLLAF 150
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 132 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 251
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 132 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 251
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 446
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 132 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 251
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 132 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 251
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 625
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 132 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKA 251
RE + E + V ++ +WK +K KTEW K+ +A
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRA 446
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 230
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 892
Query: 231 EQKAAKAK 254
+ A + K
Sbjct: 893 HKLATQVK 900
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 230
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 892
Query: 231 EQKAAKAK 254
+ A + K
Sbjct: 893 HKLATQVK 900
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 60 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 230
R KV + +RPM+A+M++ R + + P ++K GE W S+ K E+
Sbjct: 68 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEY 127
Query: 231 EQKAAKAK 254
+ A + K
Sbjct: 128 HKLATQVK 135
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 187 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 59
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 187 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 59
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 66 KVKMTDKPKRPMSAYMLWLNSAREQIKSE--NPGLRVTEIAKKGGEIWK--SMKDKTEWE 233
K K D K+P++A+M ++ R+ + E N + E+ K+ G+ W S +++ ++
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYF 243
Query: 234 QKAAKAK 254
+ A K K
Sbjct: 244 EMAKKDK 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,299
Number of Sequences: 27780
Number of extensions: 247381
Number of successful extensions: 659
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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