Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40902
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 646  ILNQEMNYLIAFYKQNTSCS*R*FQLSLNVNQNQCQMHFIQTLES 512
            IL    N L+ F     + + R  +LSL  N   C+  F+Q L S
Sbjct: 894  ILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSS 938


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 114 LWLNSAREQIKSENPGLRV 170
           +W  + R + K +NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 295 RWWRRGRKEGSKTREKG 345
           RWW R R+    T + G
Sbjct: 44  RWWSRPREPAQTTSKAG 60


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 189 GGEIWKSMKDKTEWE 233
           GGE+W  ++DK  ++
Sbjct: 450 GGELWTVLRDKGHFD 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,713
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)