Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40896
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    34   0.002
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 256 GARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPG 357
           G +G    +G+ G+QG++G +G  G+ G  G+PG
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 262 RGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPG 366
           +G  G +   G+QG++G +G  G+ G  G+ G PG
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 29.5 bits (63), Expect = 0.033
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 274 GPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQ 384
           G +G+   QG++G +G  G+ G  G+ G  G P + Q
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQ 879



 Score = 28.7 bits (61), Expect = 0.057
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 38  QKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPG 151
           Q+G +G     G+QG QG++G +G   + V G +G PG
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQGVQG--VQGVQGVQGVPG 876



 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 35  GQKGDRGYPGRPGLQGEQGMKGNKG--QAAELVYG 133
           G +G +G  G  G+QG QG++G  G  Q  + V+G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFG 886



 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 17  GPIGPPGQKGDRGYPGRPGLQGEQGMKGNKG 109
           G  G    +G +G  G  G+QG QG++G +G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQG 873


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 92  MKGNKGQA-AELVYGAKGEPGPRGLPGN 172
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 259 ARGFPGPRGLPGIQG 303
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 92  MKGNKGQA-AELVYGAKGEPGPRGLPGN 172
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 259 ARGFPGPRGLPGIQG 303
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 92  MKGNKGQA-AELVYGAKGEPGPRGLPGN 172
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 252 MRKNRFQKIAESMKTARENPGPPGVPGD 279



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 259 ARGFPGPRGLPGIQG 303
           AR  PGP G+PG  G
Sbjct: 267 ARENPGPPGVPGDHG 281


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 265 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGA-PGAP 372
           G PGP+  P       +RG      Q   PG  PGAP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 82  TL*AWSSWI-ATITFLTWRTNRSGSTR 5
           T+  W + I AT+T+++  TNR GS +
Sbjct: 82  TVPRWRNGIPATLTYISLDTNRGGSPK 108



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 193 VYAW*TIISWQTTRSWF 143
           VY+W    SW+ T S+F
Sbjct: 219 VYSWEQNRSWRITHSYF 235


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 597 NYASRNDRSYWLSMVNPIPMMPV*GTKYCHN 689
           NY + N + Y+ + +  I  +PV    YC N
Sbjct: 96  NYNNYNKKLYYKNYIINIEQIPVPVPIYCGN 126


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 193 VYAW*TIISWQTTRSWFSF 137
           VY+W    SW+ T ++F F
Sbjct: 201 VYSWAKNDSWRITHNFFYF 219


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 597 NYASRNDRSYWLSMVNPIPMMPV*GTKYCHN 689
           NY + N + Y+ + +  I  +PV    YC N
Sbjct: 337 NYNNYNKKLYYKNYIINIEQIPVPVPIYCGN 367


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 665 NRHHWYW 645
           N HHW+W
Sbjct: 206 NLHHWHW 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,607
Number of Sequences: 438
Number of extensions: 4618
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)