Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40894
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 235 CQ*ICHCADIDA 270
           C  +CHC D DA
Sbjct: 743 CFALCHCCDFDA 754


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 418 LLAMNRPDLARKQLKLLQDIEDD 486
           +L M   DL +KQLK L+D E++
Sbjct: 365 ILRMLIIDLRKKQLKSLEDWENE 387


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 640 EVCGKRLKQQLTDAASRAPQH 702
           +VCGK L  +LT    +  QH
Sbjct: 375 DVCGKTLSTKLTLKRHKEQQH 395


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 FLMQLHNYLHDSKLLQPQSRI 305
           +  Q   Y+HD+  +QPQ ++
Sbjct: 458 YTQQQFPYVHDTLQIQPQEQL 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,345
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)