Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40889
         (663 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator...    40   0.006
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator...    40   0.006
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix...    40   0.006
BC139924-1|AAI39925.1|  584|Homo sapiens SMARCA4 protein protein.      40   0.006
BC139917-1|AAI39918.1|  584|Homo sapiens SMARCA4 protein protein.      40   0.006
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.    40   0.006
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.    40   0.006
AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related matrix-...    40   0.006

>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
           protein.
          Length = 1647

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
           hSNF2b protein.
          Length = 1647

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1647

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>BC139924-1|AAI39925.1|  584|Homo sapiens SMARCA4 protein protein.
          Length = 584

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>BC139917-1|AAI39918.1|  584|Homo sapiens SMARCA4 protein protein.
          Length = 584

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
          Length = 1647

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
          Length = 1679

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 56  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 100


>AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           a4 var protein.
          Length = 1164

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
 Frame = +2

Query: 122 LPVTGP-----DNLNALQRAIDSMEEKGLQEDPRYSQLLALRARS 241
           +P  GP     DN++ + + ++SM EKG+ +DPRY+Q+  +  RS
Sbjct: 13  IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRS 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,180,003
Number of Sequences: 237096
Number of extensions: 1576548
Number of successful extensions: 6199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6199
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)