Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40884
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 88  HFLFKIAHNGTLRHSSNRHHI 26
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 88  HFLFKIAHNGTLRHSSNRHHI 26
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 88  HFLFKIAHNGTLRHSSNRHHI 26
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 88  HFLFKIAHNGTLRHSSNRHHI 26
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 137 IGHNPDAKRTRVKLPSGAKKVL 202
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 397 GSLTYMLMVTTTVRMLYRVH 338
           GS+TY +  TTT+  +  +H
Sbjct: 147 GSVTYGMRFTTTLACMMDLH 166


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -2

Query: 249 RPPPATIPTMPLLLDGRTFLA 187
           +P P     +P++++GR  +A
Sbjct: 218 KPTPVQKHALPIIMNGRDLMA 238


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 KVKRNLLAICTWCC 336
           K +  +++ C WCC
Sbjct: 3   KGRHVVMSCCCWCC 16


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 296  LYLWYALPAFKIGLQYVHLQQQYRP 222
            L L +A PA+  G   V  QQQ  P
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQQQQLPP 1287


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 156 ASGLCPITVAKFPEARA 106
           AS  C +   K+P+ARA
Sbjct: 624 ASSYCGLRDRKYPDARA 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,987
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)