Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40883
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 273 QQARELLQPALRGRERG 323
           Q  +ELL P+ R +ERG
Sbjct: 564 QSTKELLSPSYRVKERG 580



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 19  GRHVRDRQRALQGAHPHRR-GAPRLQ 93
           GRHVRD    L   H + +   PR++
Sbjct: 90  GRHVRDFLNGLDNLHEYLKFSYPRMR 115


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 19  GRHVRDRQRALQGAHPHRRGAPRLQEAGQHPQQAAGGVHP 138
           G+H    Q+    AH       + Q++    QQ+  G+HP
Sbjct: 184 GQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHP 223


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +1

Query: 61  HPHRRGAPRLQEAGQHPQQAAGGVHPH 141
           HPHR  +P  Q          G  H H
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMGPPHHH 353


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 31  RDRQRALQGAHPHRRGAP 84
           RD   +   +HPH  GAP
Sbjct: 637 RDASLSSTHSHPHEPGAP 654


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 546 WSSACTGPRYLRDPALRGERGSVHEP 469
           W  A   PRY ++   R +   +HEP
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 546 WSSACTGPRYLRDPALRGERGSVHEP 469
           W  A   PRY ++   R +   +HEP
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,667
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)