Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40877
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    68   1e-13
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    67   2e-13
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    62   5e-12
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    59   6e-11
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    58   8e-11
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    58   1e-10
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    58   1e-10
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    58   1e-10
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        42   5e-06
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.6  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 68.1 bits (159), Expect = 1e-13
 Identities = 32/62 (51%), Positives = 41/62 (66%)
 Frame = +1

Query: 607 KARRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQNAAPNGNES 786
           +ARR RTAFT EQL+ LE +F   +YLS+ ER  +A +L L+E QVKIWFQN      + 
Sbjct: 7   EARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 66

Query: 787 RP 792
            P
Sbjct: 67  NP 68


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 67.3 bits (157), Expect = 2e-13
 Identities = 30/58 (51%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = +1

Query: 592 TPRENKARRR-RTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           T R++K  R+ RT FT++QLL LE++F  K+YL++ ER++ +++L L+E QVKIWFQN
Sbjct: 2   TLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 62.5 bits (145), Expect = 5e-12
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +1

Query: 607 KARRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           + +R+RT++T  Q LELE+EFH  +YL+   R +IA AL L+E Q+KIWFQN
Sbjct: 7   EVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 58


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 58.8 bits (136), Expect = 6e-11
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +1

Query: 592 TPRENKARRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           TP E   +R RTAF+ EQL  L+REF   +YL+   R Q++  L L+E Q+KIWFQN
Sbjct: 17  TPEE---KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQN 70


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 58.4 bits (135), Expect = 8e-11
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +1

Query: 613 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           +R RTAF++EQL  L+REF   +YL+   R Q++  L L+E Q+KIWFQN
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQN 70


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 58.0 bits (134), Expect = 1e-10
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 613 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           +R R  +T  Q LELE+EFH  +YL+   R +IA AL L+E Q+KIWFQN
Sbjct: 9   KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 58.0 bits (134), Expect = 1e-10
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 613 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           +R R  +T  Q LELE+EFH  +YL+   R +IA AL L+E Q+KIWFQN
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 320


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = +1

Query: 613 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAAALKLSEVQVKIWFQN 762
           RR R  +T  Q LELE+EFH   YL+   R +IA AL L+E Q+KIWFQN
Sbjct: 9   RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQN 58


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 17/28 (60%), Positives = 25/28 (89%)
 Frame = +1

Query: 679 KYLSLTERSQIAAALKLSEVQVKIWFQN 762
           +YL+L ER+++AA+L L++ QVKIWFQN
Sbjct: 4   QYLALPERAELAASLGLTQTQVKIWFQN 31


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 533 EKIMRQATTRNQTKRTRARTPHERTRRGEEER 628
           EK++ + T+RN+  R+R R  +      E ++
Sbjct: 27  EKLLEERTSRNRYSRSREREQNSYKNEREYQK 58


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 466 KPRGGQREERQP 501
           KPRG   EE+QP
Sbjct: 7   KPRGSSAEEQQP 18


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 466 KPRGGQREERQP 501
           KPRG   EE+QP
Sbjct: 7   KPRGSSAEEQQP 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,407
Number of Sequences: 438
Number of extensions: 4552
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)