Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40872
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    75   8e-15
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    74   1e-14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.3  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   8.3  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 36/74 (48%), Positives = 40/74 (54%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 212 FHFRKNKNFCPVLN 253
           FH  KN  + P +N
Sbjct: 61  FHLMKNPLWRPTVN 74



 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 36/89 (40%)
 Frame = +1

Query: 208 KFPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK 387
           +F L K   +  +  LD+LWTLV  +TR KY        PVIN++++           P 
Sbjct: 60  RFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPD 119

Query: 388 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 474
            PVI+                GG   L A
Sbjct: 120 TPVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 36/74 (48%), Positives = 40/74 (54%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 212 FHFRKNKNFCPVLN 253
           FH  KN  + P +N
Sbjct: 61  FHLMKNPLWRPTVN 74



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 36/89 (40%)
 Frame = +1

Query: 208 KFPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK 387
           +F L K   +  +  LD+LWTL+  + R KY        PVIN++++           P+
Sbjct: 60  RFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPE 119

Query: 388 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 474
            PVIV                GG   L A
Sbjct: 120 TPVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 178 SWILW-QTWYEKFPL*KEQEFLSSFELDK 261
           S I+W Q  Y+     +++ F  SFELDK
Sbjct: 75  SGIIWDQELYQNMDYRQDRTFFHSFELDK 103


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
 Frame = -3

Query: 479 IYADSTQAPPTSLIFFSADFEKNFAFTMTG-----CLGSLPLPSNL*YPALTILMTGTLP 315
           I++ +T+A  TS+   SA ++ +    +          +  L SN    + + + T  +P
Sbjct: 491 IFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIP 550

Query: 314 SGADAYFSLVCSETNVQSLSSSKLDRNSCSF*SGNFSYQVCQSIQD 177
           + + + ++      +  SLSSS    ++    S + SY+V  +  D
Sbjct: 551 NASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSD 596


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 342 DNIDDGDLAIWSRCILQPRL 283
           DN+D+ DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,893
Number of Sequences: 5004
Number of extensions: 36683
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)