Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40872
(496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 95 1e-19
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 95 1e-19
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 95 1e-19
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 95 1e-19
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 94 2e-19
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 92 8e-19
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 43 7e-04
AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein. 29 6.7
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 29 8.9
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 95.1 bits (226), Expect = 1e-19
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 32 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 212 FHFRKNKNFCPVLN 253
+H ++N++FCP +N
Sbjct: 61 YHLKRNQSFCPTVN 74
Score = 67.7 bits (158), Expect = 2e-11
Identities = 36/88 (40%), Positives = 45/88 (51%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 390
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 391 PVIVXXXXXXXXXXXXXXDVGGACVLSA 474
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 95.1 bits (226), Expect = 1e-19
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 32 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 212 FHFRKNKNFCPVLN 253
+H ++N++FCP +N
Sbjct: 61 YHLKRNQSFCPTVN 74
Score = 67.7 bits (158), Expect = 2e-11
Identities = 36/88 (40%), Positives = 45/88 (51%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 390
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 391 PVIVXXXXXXXXXXXXXXDVGGACVLSA 474
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 95.1 bits (226), Expect = 1e-19
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 32 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 212 FHFRKNKNFCPVLN 253
+H ++N++FCP +N
Sbjct: 61 YHLKRNQSFCPTVN 74
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 348
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 95.1 bits (226), Expect = 1e-19
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2
Query: 32 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 212 FHFRKNKNFCPVLN 253
+H ++N++FCP +N
Sbjct: 61 YHLKRNQSFCPTVN 74
Score = 67.7 bits (158), Expect = 2e-11
Identities = 36/88 (40%), Positives = 45/88 (51%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 390
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 391 PVIVXXXXXXXXXXXXXXDVGGACVLSA 474
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 94.3 bits (224), Expect = 2e-19
Identities = 38/69 (55%), Positives = 48/69 (69%)
Frame = +2
Query: 47 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 226
+KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 227 NKNFCPVLN 253
N++FCP +N
Sbjct: 65 NQSFCPTVN 73
Score = 67.7 bits (158), Expect = 2e-11
Identities = 36/88 (40%), Positives = 45/88 (51%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 390
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 60 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 119
Query: 391 PVIVXXXXXXXXXXXXXXDVGGACVLSA 474
PVIV VGGACVL A
Sbjct: 120 PVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 92.3 bits (219), Expect = 8e-19
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +2
Query: 32 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 211
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 212 FHFRKNKNFCPVLN 253
++ ++N++FCP +N
Sbjct: 61 YNLKRNQSFCPTVN 74
Score = 64.5 bits (150), Expect = 2e-10
Identities = 35/88 (39%), Positives = 44/88 (50%)
Frame = +1
Query: 211 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 390
+ L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ KQ
Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120
Query: 391 PVIVXXXXXXXXXXXXXXDVGGACVLSA 474
PVIV VGGACVL A
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 42.7 bits (96), Expect = 7e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1
Query: 253 LDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 348
LDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 3 LDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34
>AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein.
Length = 126
Score = 29.5 bits (63), Expect = 6.7
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 201 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 49
P+LPK+PG ++ L W S P P G + + PCP PL FLV+
Sbjct: 55 PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +3
Query: 345 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 473
+W L Q PQ + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,508,942
Number of Sequences: 237096
Number of extensions: 1450380
Number of successful extensions: 3219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3212
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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