Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40871
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 62 7e-11
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.9
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 2.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.6
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 3.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.5
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 7.8
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 26 7.8
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 62.5 bits (145), Expect = 7e-11
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Frame = +3
Query: 3 KPFNHLFWSPSGQFIVLANLGL-TGGALEFLDTNDFT-------IMNV-----ADHYQMS 143
K N LF +P G+F+V A LG T LEF D + T + NV A+H+ M+
Sbjct: 514 KTCNSLFMAPKGRFMVAATLGSSTQYDLEFYDLDFDTEKKEPDALANVQQIGSAEHFGMT 573
Query: 144 GIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRE 257
+EWDP+GRYV T + + K++ GY + F+G +LRE
Sbjct: 574 ELEWDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLRE 611
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 272 FAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFT 451
F QF WRPRPP+ L+ Y F+ +D S A++EL A+R + + ++
Sbjct: 617 FKQFIWRPRPPSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQ 676
Query: 452 EYRESKIQEWNEQK 493
+YR+ I E++
Sbjct: 677 KYRDEVIARVAEER 690
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 356 YYSQFESKDRMRSSKASKELVAKRTEQMKKFTE----YRESKIQE 478
Y F+ K+R + KE+ AK T+Q +K TE R+ K++E
Sbjct: 226 YQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEE 270
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 24 WSPSGQFIVLANLGLTGG-ALEFLDTNDFT-IMNVADHYQ-MSGIEWDPTGRYVVT 182
W+P+G +V G TGG L D + + +++ H + + G+ WDP G++ ++
Sbjct: 334 WNPNGNCVVC--WGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLS 387
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 18 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVA-DH-YQMSGIEWDPTGRYVVT 182
L WS F++ G +L D + ++ DH + + G+ WDP +Y+V+
Sbjct: 134 LCWSVDSNFLIA---GAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVS 187
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQ-MSGIEWDPTGRYVVT 182
L WS Q +V ++GL + + T + + H + GI +DP G+Y T
Sbjct: 140 LCWSYDSQLVV--SVGLDSSIIVWNGTTFERLKRIEAHQSHVKGITFDPAGKYFAT 193
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 12 NHLFWSPSGQFIVLANLGLTGGALEFLD--TNDFTIMNVADHYQMSGIEWDPTGRYVVTG 185
N + W+P G+ ++ G + G + T +F ++N + Y + EW GR++++G
Sbjct: 85 NVVRWTPDGRRLLT---GSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRWLISG 141
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 395 SKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELEIT*TQTV 535
S A KE+V + E+ S+I+ W E KP+ ++ QT+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTI 253
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 362 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELE 514
SQ ES + + E++A R+E + + + +E + NE+ R ELE
Sbjct: 1575 SQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELE 1625
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 570 NLFDCIHRIRVKTVCVYVISNSSRRGFCSFHSWILDSRYSVNFFICSV 427
+L+D +H+I KT + ++S RG C F S N + CS+
Sbjct: 861 SLYDFLHKIMKKTNMNCLTPDASLRGDCGF--------LSANLYACSI 900
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 582 EKFNNLFDCIHRIRVKTVCVYVIS-NSSRRGFC 487
E NNL +CI+R +T V +++ N + +G C
Sbjct: 112 EGINNLAECINRAHEETKSVIIVTENMAGQGNC 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,804
Number of Sequences: 5004
Number of extensions: 64741
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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