Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40870
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 332 PLTDSIPIHHQNHLVLLVFASR 267
           PLTD++PIH   H  L +  +R
Sbjct: 532 PLTDTVPIHTWIHPWLPLLRNR 553


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 159 HRSHWTRIQYLVMKSHQYQIS*PQVLWGIEL 67
           HR  W  +Q  V  +  YQ++  ++++G +L
Sbjct: 88  HRIRWESVQKEVTVTGTYQLTETELVFGAKL 118


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 30  SLYYQHMEPYM 62
           SLYY +MEP+M
Sbjct: 275 SLYYVNMEPFM 285


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 474 LVVLELTL*NHYGKCHANF 530
           ++V E ++  HYG  HA +
Sbjct: 241 MIVYEFSISRHYGILHATY 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,724
Number of Sequences: 438
Number of extensions: 3893
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)