Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40862
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    33   0.16 
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    31   1.1  
12_01_0002 - 4477-6144,6571-7440                                       29   2.6  
11_01_0003 - 6099-7766,8193-9062                                       29   2.6  
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963...    29   2.6  
01_05_0007 - 17017106-17017804,17017936-17018025                       29   2.6  
09_06_0081 + 20745627-20748144,20748211-20748308                       29   4.5  
08_01_0337 - 2994086-2995489                                           29   4.5  
04_01_0205 - 2489201-2489630,2489704-2489945                           28   7.9  
03_05_1129 - 30595580-30595771,30596119-30597162                       28   7.9  

>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 47  PPEPQPQSIFATPRYQLFFDHTIRSLAPWMQRGRP*PAPGTSATALQ 187
           PP+PQPQ    +P++   F       + +  RG P P  G++A   Q
Sbjct: 7   PPQPQPQPAHPSPQFPAVFTPPPPPTSGFSSRGSPSPGTGSAAAQAQ 53


>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 14  AATRGSLRS*LPPEPQPQSIFATPRYQLFFDHTIRSLAPWMQRGR 148
           A +  +L +  PPEPQPQ   ATP +    D   R      +RGR
Sbjct: 16  AQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGR 60


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   RPRARCNTRLAPLLTASRASTAINIRNAAIPTILRSHDTFP 123
           +PR R  + LA    ++ A T + + +   P ++R H TFP
Sbjct: 35  QPRRRWRSSLATGFRSALACTIVGVASIYAPLVIRRHLTFP 75


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   RPRARCNTRLAPLLTASRASTAINIRNAAIPTILRSHDTFP 123
           +PR R  + LA    ++ A T + + +   P ++R H TFP
Sbjct: 35  QPRRRWRSSLATGFRSALACTIVGVASIYAPLVIRRHLTFP 75


>01_05_0579 +
           23393632-23393734,23393765-23394513,23395958-23396315,
           23396830-23396852
          Length = 410

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 560 SRVGVGGTVHRHRHARSCLW 501
           +RVGV G  HR  H R C W
Sbjct: 194 ARVGVSGARHRLHHRRVCFW 213


>01_05_0007 - 17017106-17017804,17017936-17018025
          Length = 262

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 67  INIRNAAIPTILRSHDTFPR 126
           +NIRN+A  TILR HD F R
Sbjct: 33  VNIRNSAQYTILRHHDQFKR 52


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 538 VPPTPTRLLQRQPAWQHTFPALAADQPPFYT 630
           +PPTPTRL+   PA     P   AD PP +T
Sbjct: 363 MPPTPTRLVPTPPA-----PGPPADVPPRFT 388


>08_01_0337 - 2994086-2995489
          Length = 467

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 521 AYVCVQCPLL---RRGCCNGSRHGSILFLP*LPTNLH 622
           A +C +CP L   RRG C+G R G++     LP   H
Sbjct: 129 ATLCARCPRLPRPRRGRCSGDRDGALPVRDALPPVAH 165


>04_01_0205 - 2489201-2489630,2489704-2489945
          Length = 223

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 574 PAWQHTFPALAADQPPFYTNAAGEIELKENFSS 672
           P W+H  P   AD PPF    A + +   +FSS
Sbjct: 157 PRWRHPPPPAPADIPPFNPTKAADAD-NNSFSS 188


>03_05_1129 - 30595580-30595771,30596119-30597162
          Length = 411

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 294 RGSPPNQSTISTASNSPPPAQGV*AR 371
           RGSP     +  AS +PP A GV AR
Sbjct: 186 RGSPTGSIEVELASAAPPEASGVEAR 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,773,833
Number of Sequences: 37544
Number of extensions: 437570
Number of successful extensions: 1345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)