Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40862
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24497-1|AAC50128.1| 4303|Homo sapiens autosomal dominant polycy...    31   5.0  
L43619-1|AAC41765.1| 4292|Homo sapiens polycystic kidney disease...    30   6.6  
L33243-1|AAC37576.1| 4302|Homo sapiens polycystic kidney disease...    30   6.6  
AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with holl...    30   8.7  

>U24497-1|AAC50128.1| 4303|Homo sapiens autosomal dominant
           polycystic kidney disease protein 1 protein.
          Length = 4303

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 517 ACLCLCTVPPTPTRLLQRQPA-WQHTFPA 600
           ACL LC+ PP P     R P   QH FPA
Sbjct: 243 ACLSLCSGPPAPPAPTCRGPTLLQHVFPA 271


>L43619-1|AAC41765.1| 4292|Homo sapiens polycystic kidney disease 1
           protein protein.
          Length = 4292

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 517 ACLCLCTVPPTPTRLLQRQPA-WQHTFPA 600
           ACL LC+ PP P     R P   QH FPA
Sbjct: 243 ACLSLCSGPPPPPAPTCRGPTLLQHVFPA 271


>L33243-1|AAC37576.1| 4302|Homo sapiens polycystic kidney disease 1
           protein protein.
          Length = 4302

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 517 ACLCLCTVPPTPTRLLQRQPA-WQHTFPA 600
           ACL LC+ PP P     R P   QH FPA
Sbjct: 243 ACLSLCSGPPPPPAPTCRGPTLLQHVFPA 271


>AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with
           holliday junction DNA helicase RUVB like protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 469 VCSCQYEFLNYQRQLRACLCLCTVPPT-PTRLLQRQPAWQHTFPALAA 609
           +C C  +F    RQL+    L   PPT P+RL+QR        P + A
Sbjct: 682 ICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEGMRADPGVLA 729


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,805,598
Number of Sequences: 237096
Number of extensions: 2293546
Number of successful extensions: 5582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5582
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)