Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40857
(537 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 136 7e-35
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 137 2e-32
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 81 2e-15
AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein pr... 30 4.5
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 30 6.0
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.0
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.0
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.0
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 30 6.0
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 136 bits (329), Expect(2) = 7e-35
Identities = 59/81 (72%), Positives = 74/81 (91%)
Frame = +3
Query: 21 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 200
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 201 VDIRVTVKGGGHVAQVYASDK 263
VDIRV VKGGGHVAQ+Y +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 30.7 bits (66), Expect(2) = 7e-35
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 285 PSTRNM*TKPQRRKSKTS*FNTIGVCW 365
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +3
Query: 21 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 200
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 201 VDIRVTVKGGGHVAQVYA 254
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 124 bits (298), Expect = 3e-28
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +3
Query: 21 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 200
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 201 VDIRVTVKGGGHVAQVYA 254
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 124 bits (298), Expect = 3e-28
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +3
Query: 21 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 200
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 201 VDIRVTVKGGGHVAQVYA 254
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 124 bits (298), Expect = 3e-28
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +3
Query: 21 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 200
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 201 VDIRVTVKGGGHVAQVYA 254
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 124 bits (298), Expect = 3e-28
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKS
Sbjct: 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 81.4 bits (192), Expect = 2e-15
Identities = 50/145 (34%), Positives = 68/145 (46%)
Frame = +3
Query: 24 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 203
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 204 DIRVTVKGGGHVAQVYASDKLFRRL*SPSTRNM*TKPQRRKSKTS*FNTIGVCWWLTXXX 383
DI V VKG GHV Q+YA + + P + T CWW T
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 384 XXXXXXXXXXXXXDTRNLTVKPSTK 458
TRN + KP K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
Score = 35.9 bits (79), Expect = 0.091
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +2
Query: 260 QAISKALIAFYQKYVDEASKKEIKDILVQ 346
Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 97 QYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein
protein.
Length = 198
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +1
Query: 148 STNF-RNLSFCSARKNSLWS 204
S+NF +N+SFC R++SLWS
Sbjct: 49 SSNFEKNMSFCQIRRDSLWS 68
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 6.0
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 335 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 475
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 311 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 394
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 311 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 394
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 311 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 394
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 6.0
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 335 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 475
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,300,446
Number of Sequences: 237096
Number of extensions: 1868463
Number of successful extensions: 4330
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4330
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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