Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40851
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = -1

Query: 240 GVEEFFYSFAPLSRLCHCSATADCDHCEQNVRSCLGLRRCRLNHCYRRGPSPYSVIP 70
           G + FF      + +  C    +C+      R C   + CRL  C   G  P  V+P
Sbjct: 206 GCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKC---QECRLKKCLTVGMRPECVVP 259


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = -1

Query: 240 GVEEFFYSFAPLSRLCHCSATADCDHCEQNVRSCLGLRRCRLNHCYRRGPSPYSVIP 70
           G + FF      + +  C    +C+      R C   + CRL  C   G  P  ++P
Sbjct: 3   GCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKC---QECRLKKCLTVGMRPECMVP 56


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 421 RVPKEKRIIL*QTKKATLDRNRRGGIAYM 507
           +V K+K IIL   K++T      G ++Y+
Sbjct: 698 KVKKDKDIILNVPKESTQSLTTTGNVSYL 726


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 118 TTPPKPQTRS 147
           T PPKPQT++
Sbjct: 248 TKPPKPQTKT 257


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 THTLNTSTPNQNRAITIEPP 307
           ++ L+TS   QN+A+   PP
Sbjct: 80  SNLLSTSPSGQNKAVAPYPP 99


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 THTLNTSTPNQNRAITIEPP 307
           ++ L+TS   QN+A+   PP
Sbjct: 80  SNLLSTSPSGQNKAVAPYPP 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,727
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)