Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40846
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89387-1|AAC52056.1| 142|Homo sapiens RNA polymerase II subunit... 46 2e-04
U85510-1|AAC80226.1| 142|Homo sapiens RNA polymerase II subunit... 46 2e-04
BC093797-1|AAH93797.1| 142|Homo sapiens polymerase (RNA) II (DN... 46 2e-04
BC093795-1|AAH93795.1| 142|Homo sapiens polymerase (RNA) II (DN... 46 2e-04
BC017205-1|AAH17205.1| 142|Homo sapiens polymerase (RNA) II (DN... 46 2e-04
AC012306-1|AAY14877.1| 84|Homo sapiens unknown protein. 46 2e-04
AC006011-3|AAX82034.1| 57|Homo sapiens unknown protein. 40 0.009
>U89387-1|AAC52056.1| 142|Homo sapiens RNA polymerase II subunit
hsRPB4 protein.
Length = 142
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVRHLLQSK 655
++E+RK VFM TL YT F +FKN+ETIA+VR LL K
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQK 90
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 90 KKLHKFELACLANLCPET 107
>U85510-1|AAC80226.1| 142|Homo sapiens RNA polymerase II subunit
hsRPB4 protein.
Length = 142
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVRHLLQSK 655
++E+RK VFM TL YT F +FKN+ETIA+VR LL K
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQK 90
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 90 KKLHKFELACLANLCPET 107
>BC093797-1|AAH93797.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVRHLLQSK 655
++E+RK VFM TL YT F +FKN+ETIA+VR LL K
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQK 90
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 90 KKLHKFELACLANLCPET 107
>BC093795-1|AAH93795.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVRHLLQSK 655
++E+RK VFM TL YT F +FKN+ETIA+VR LL K
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQK 90
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 90 KKLHKFELACLANLCPET 107
>BC017205-1|AAH17205.1| 142|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide D protein.
Length = 142
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVRHLLQSK 655
++E+RK VFM TL YT F +FKN+ETIA+VR LL K
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQK 90
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 90 KKLHKFELACLANLCPET 107
>AC012306-1|AAY14877.1| 84|Homo sapiens unknown protein.
Length = 84
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 423 VEEDAADLQFPKEFENAETLMISEVDMLLK 512
VEEDA+ L FPKEFE AETL+ SEV MLL+
Sbjct: 13 VEEDASQLIFPKEFETAETLLNSEVHMLLE 42
Score = 41.1 bits (92), Expect = 0.004
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +2
Query: 503 VIENRKXXXXXXXXXXXXXXVFMTTLTYTNMFKKFKNKETIAAVR 637
++E+RK VFM TL YT F +FKN+ETIA+VR
Sbjct: 40 LLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
>AC006011-3|AAX82034.1| 57|Homo sapiens unknown protein.
Length = 57
Score = 39.9 bits (89), Expect = 0.009
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 652 KKLHKFELASLANLCPET 705
KKLHKFELA LANLCPET
Sbjct: 5 KKLHKFELACLANLCPET 22
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,575,524
Number of Sequences: 237096
Number of extensions: 1366201
Number of successful extensions: 1510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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