Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40845
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   6.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 452 ASCWLVGSSLKPVL*ASMASSYLDKYAKTLPLREY 348
           AS  +VGSSL  V     A  ++  +AKTLPL ++
Sbjct: 475 ASHEVVGSSLLFVHDTKNAGIWMIDFAKTLPLPQH 509


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 452 ASCWLVGSSLKPVL*ASMASSYLDKYAKTLPLREY 348
           AS  +VGSSL  V     A  ++  +AKTLPL ++
Sbjct: 390 ASHEVVGSSLLFVHDTKNAGIWMIDFAKTLPLPQH 424


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 452 ASCWLVGSSLKPVL*ASMASSYLDKYAKTLPLREY 348
           AS  +VGSSL  V     A  ++  +AKTLPL ++
Sbjct: 709 ASHEVVGSSLLFVHDTKNAGIWMIDFAKTLPLPQH 743


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +3

Query: 459 SEGCRTSHERK*FRSRALIRLYKNPRTREW 548
           S GC   +E++   +  ++   K  R ++W
Sbjct: 69  STGCNKCNEKQKHTANKVVNYLKTKRPKDW 98


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +3

Query: 459 SEGCRTSHERK*FRSRALIRLYKNPRTREW 548
           S GC   +E++   +  ++   K  R ++W
Sbjct: 69  STGCNKCNEKQKHTANKVVNYLKTKRPKDW 98


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 134 KVEQLKKKGNDALVNQN 184
           KV QLKKK     +NQN
Sbjct: 2   KVHQLKKKRRKKNLNQN 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,478
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)