Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40840
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    30   0.027
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 464 FVLLKSDVKWDGDTVYQNLMN*TCGKLMAKHYYRN-LSQWNQMEEFYTNVHVCILGGMLT 640
           F+ ++S++ W     Y N  N  C       Y R+ LS W QM + +  + VC +  +  
Sbjct: 89  FMSMRSELPWGSCNNYWNTKN--C----VNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNM 142

Query: 641 TVTIIT-P*PKYW 676
           T+T +T P  ++W
Sbjct: 143 TITELTDPVKEFW 155


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 481 RCKMGWRYCISKLDELNLW 537
           R K  W+Y    LD L LW
Sbjct: 501 RVKEDWKYVAMVLDRLFLW 519


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 50 TLIGFYFGEANIR 12
          TLI  YFGEA+I+
Sbjct: 14 TLIFLYFGEADIK 26


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 481 RCKMGWRYCISKLDELNLW 537
           + K  W+Y    LD L LW
Sbjct: 506 KVKEDWKYVAMVLDRLFLW 524


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 481 RCKMGWRYCISKLDELNLW 537
           + K  W+Y    LD L LW
Sbjct: 506 KVKEDWKYVAMVLDRLFLW 524


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 425 QSKDVPKHFHSGNFVLLKSDVKWDGDTVY 511
           Q+  + +H+ +   V+ K    WD D+ Y
Sbjct: 297 QTSIMSRHYSTRAIVIEKGQSIWDYDSTY 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,076
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)