Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40839
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.16 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   0.86 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   0.86 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 233 NSCPLRRILSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 412
           +S P   + +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P   
Sbjct: 365 SSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP--- 421

Query: 413 RNTFHLSSAKPIRRQSTRL*SKPSEPD---PTRR 505
            N  ++S   P+      + + P+ P    P RR
Sbjct: 422 -NMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRR 454


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 376
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 376
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,723
Number of Sequences: 438
Number of extensions: 3829
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)