Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40838
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.66 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.66 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.66 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 195 NNCLKCSLGEICDYRSVINSFDNII 269
           N C  C   E+CDY  + + ++  +
Sbjct: 217 NMCALCEKPEVCDYPDIYSGYEGAL 241


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 195 NNCLKCSLGEICDYRSVINSFDNII 269
           N C  C   E+CDY  + + ++  +
Sbjct: 217 NMCALCEKPEVCDYPDIYSGYEGAL 241


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 195 NNCLKCSLGEICDYRSVINSFDNII 269
           N C  C   E+CDY  + + ++  +
Sbjct: 217 NMCALCEKPEVCDYPDIYSGYEGAL 241


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 293 NYKFVHYNDY--IVKTIYYTSVITDFAKTTL*TIIY 192
           NYK+ +YN+Y    K +YY + I +  +  +   IY
Sbjct: 88  NYKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIY 123


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   LPTHKENIYKEN-AECKYFFKLCIKNKLHQ*KKHYTH 109
           L +H  N+Y+   A C Y  K C   KLH   + Y+H
Sbjct: 36  LKSHS-NVYQYRCANCTYATKYCHSLKLH--LRKYSH 69


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 95  KHYTHYHVFDTHTRVHT 145
           K +T  H   TH R+HT
Sbjct: 17  KRFTRDHHLKTHMRLHT 33


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 635 EANTPGW 615
           EANTPGW
Sbjct: 36  EANTPGW 42


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 54  KYLHSAFSLYIFSLCV 7
           K +H+A + Y+FSL V
Sbjct: 82  KSMHTATNYYLFSLAV 97


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 98  HYTHYHVFDTHTR 136
           HY HYH+    T+
Sbjct: 7   HYQHYHITPVFTK 19


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 252 YLLHFCNHRFRQDYTLDNY 196
           Y+  FCN R+R   +L  +
Sbjct: 36  YVCEFCNRRYRTKNSLTTH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,508
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)