Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40836
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   158   5e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   158   5e-41
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  158 bits (383), Expect = 5e-41
 Identities = 69/85 (81%), Positives = 77/85 (90%)
 Frame = +3

Query: 255 GKGDGHREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDP 434
           GK  G REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDP
Sbjct: 148 GKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDP 207

Query: 435 KNTPIVISWAIAQTVTTVAGIISYP 509
           K TP +ISW IAQ VTTVAGI+SYP
Sbjct: 208 KKTPFLISWGIAQVVTTVAGIVSYP 232



 Score =  145 bits (351), Expect = 4e-37
 Identities = 68/85 (80%), Positives = 69/85 (81%)
 Frame = +1

Query: 1   IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXX 180
           IPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF       
Sbjct: 63  IPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASG 122

Query: 181 XXXXXTSLCFVYPLDFARTRLAADV 255
                TSLCFVYPLDFARTRLAADV
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADV 147



 Score = 71.7 bits (168), Expect = 6e-15
 Identities = 31/36 (86%), Positives = 34/36 (94%)
 Frame = +2

Query: 509 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTXG 616
           FDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KT G
Sbjct: 233 FDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 273 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 407
           + + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  158 bits (383), Expect = 5e-41
 Identities = 69/85 (81%), Positives = 77/85 (90%)
 Frame = +3

Query: 255 GKGDGHREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDP 434
           GK  G REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDP
Sbjct: 148 GKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDP 207

Query: 435 KNTPIVISWAIAQTVTTVAGIISYP 509
           K TP +ISW IAQ VTTVAGI+SYP
Sbjct: 208 KKTPFLISWGIAQVVTTVAGIVSYP 232



 Score =  145 bits (351), Expect = 4e-37
 Identities = 68/85 (80%), Positives = 69/85 (81%)
 Frame = +1

Query: 1   IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXX 180
           IPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF       
Sbjct: 63  IPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASG 122

Query: 181 XXXXXTSLCFVYPLDFARTRLAADV 255
                TSLCFVYPLDFARTRLAADV
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADV 147



 Score = 71.7 bits (168), Expect = 6e-15
 Identities = 31/36 (86%), Positives = 34/36 (94%)
 Frame = +2

Query: 509 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTXG 616
           FDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KT G
Sbjct: 233 FDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 273 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 407
           + + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 503 LSFDTVRRRMMMQSGRAKSDILYKNTI 583
           L+ DT+ R+ ++   + K D LY N +
Sbjct: 286 LTTDTLIRKYIIPKEQVKEDSLYTNIV 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,599
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)