Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40835
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.1  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    28   1.4  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    28   1.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   4.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 196 VTGPGGEPVKGSPYAADKRRATTANISLVKVADEAVKELHA 318
           V GPGG+P K +    +KR  T  N  + ++ D AV  L A
Sbjct: 253 VAGPGGKPKKTAHNMIEKRYRTNLNDRICELRD-AVPSLRA 292


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 469 IEEGSAECVRAISSGARRTKSGSAPKWPGWRCLSYNIKPTAGGQA 603
           IEEG    V A ++  +     S   W G R  S NI P++ G A
Sbjct: 170 IEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAA 214


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 469 IEEGSAECVRAISSGARRTKSGSAPKWPGWRCLSYNIKPTAGGQA 603
           IEEG    V A ++  +     S   W G R  S NI P++ G A
Sbjct: 170 IEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAA 214


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 440 STAKIATEKTALRWYNASFLTXISLCTPLVG 348
           S +K+  E    RWY+ S+   +++C  ++G
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIG 828


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 476  SSIXWARTSPTASTAKIATEKTALRWYNASFLTXI 372
            + + W   S TA   K+AT  TAL  Y+A     I
Sbjct: 1154 NELGWTIVSLTAGGIKLATNNTALSPYSAEVTVEI 1188


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 DKRRATTANISLVKVADEAVKELHAEED*DVVDPRPTKGVHKEMXVKKEALYH 402
           D  +A++   +  +V D A +  H+E +    DP   KGVH  M     AL H
Sbjct: 372 DSDKASSVQGNEDEVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,160
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)