Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40835
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.49 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 136 DGEAVEFAVVAGEKGFEAAGVTGPGGEPV 222
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 660 AWLSLVVVSIVVPTGLLLL 604
           A LSLVVV++ + TG  LL
Sbjct: 60  AMLSLVVVTVAISTGEWLL 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 609 LLGLAPCCWFDV 574
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 609 LLGLAPCCWFDV 574
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +1

Query: 163 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRATTANISLVKVADEAVKEL 312
           +AG+   +  G  G   E   G    ++KRR        VK   + + EL
Sbjct: 299 IAGKFNLQVRGTRGEHTEAEGGIYDISNKRRLGLTEYQAVKEMHDGIAEL 348


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 459 QDLPHGVHRENCDGKN 412
           Q++  GV REN  GKN
Sbjct: 16  QNIRGGVVRENSSGKN 31


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 229 SPYAADKRRATTANISLVKVADEAVKELHA 318
           SPY  +  ++T     ++ + D A  +LHA
Sbjct: 54  SPYFRELLKSTPCKHPVIVLQDVAFSDLHA 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,647
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)