Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40832
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 420 VVDKLCEFLLDGLPELVRLL 361
           + DK+ +FL+D  PE+  LL
Sbjct: 85  IADKVVQFLIDNKPEIWVLL 104


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 420 VVDKLCEFLLDGLPELVRLL 361
           + DK+ +FL+D  PE+  LL
Sbjct: 85  IADKVVQFLIDNKPEIWVLL 104


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKNTLHFN 626
           SR+  +R  + EP++  S   +  + +N K + N N  + N
Sbjct: 66  SRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKNTLHFN 626
           SR+  +R  + EP++  S   +  + +N K + N N  + N
Sbjct: 66  SRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNN 106


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 PRPGS*GGAPAQEVRREGTHTAYRLQT 425
           PRP S     +QE+ REG    ++  T
Sbjct: 631 PRPKSENNFASQELSREGRRIFHKSDT 657


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 PRPGS*GGAPAQEVRREGTHTAYRLQT 425
           PRP S     +QE+ REG    ++  T
Sbjct: 599 PRPKSENNFASQELSREGRRIFHKSDT 625


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKN 611
           SR+  +R  + EP++  S   +  + +N K + N N
Sbjct: 67  SRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNN 102


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKN 611
           SR+  +R  + EP++  S   +  + +N K + N N
Sbjct: 67  SRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNN 102


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKN 611
           SR+  +R  + EP++  S   +  + +N K + N N
Sbjct: 67  SRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNN 102


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKN 611
           SR+  +R  + EP++  S   +  + +N K + N N
Sbjct: 67  SRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNN 102


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 210 LGWMSSLLILSSQACHLRTCSSR 142
           L W S  L ++  AC +R  + R
Sbjct: 67  LSWQSKWLSINHSACAIRCLAQR 89


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 504 SRELRQRIEALEPEVKISEKEDLRNEDNMKLDLNKNTLHFN 626
           SR+ R+R  + EP++  S        +N   + N   L++N
Sbjct: 289 SRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYN 329


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 73  HVGGSRDPGRTRRDPETNALL*NARGTGTKMAGL 174
           H G   DPG     PET     +A   GT +  L
Sbjct: 280 HYGHHPDPGEVDLPPETQPTPPSATLVGTTITHL 313


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 8   SFLSSPSSNTRAVKMLQRILR 70
           SFL    S + ++KML+RI R
Sbjct: 99  SFLGPIKSLSLSIKMLERIWR 119


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 119 KQTLFCKMREEQVRRWQAWDDKISKDDIQPKFQKNGKK 232
           KQT+ CK R    R W   + +I  +    K + +  K
Sbjct: 340 KQTICCKTRIIGRRSWVTRESQICNNSSSDKERNSSFK 377


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 328 PPLGCSLLTC 299
           PP+GC   TC
Sbjct: 431 PPIGCECKTC 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,081
Number of Sequences: 438
Number of extensions: 2757
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)