Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40831
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.84 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   FYSGDSYIVLNTTGDKDRLTWDIHF 75
           F  GD+ I +N    K+++ WD  F
Sbjct: 666 FQPGDTIICINIKRQKEKIEWDPGF 690


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +3

Query: 315 GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERM 449
           G  N+ + + +   + L + DC +  ++ ++FV  G+ A  + ++
Sbjct: 61  GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKL 105


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 522 PKRTMESSTGSSMP 563
           P ++ ESSTGSS+P
Sbjct: 355 PPKSSESSTGSSIP 368


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 575 NKEAIADAEEGGDDQEFERV 634
           N E++  +E  G+D ++ERV
Sbjct: 278 NTESLMKSENQGNDVQYERV 297


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 136 LDDEQFQGSAVQHREVQYYESKEFL 210
           +D EQF     +   VQY  S++ L
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDIL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,860
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)