Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40830
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 632 CCTKSTIACGQTSPAVCRC 688
           CC      C  T PA C+C
Sbjct: 749 CCDFDACDCEMTCPAGCKC 767


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 615  AAERLLAAQNPLSHADRPHQLFADAPP 695
            A E     +N   H    HQL   APP
Sbjct: 1341 AGEYSCYVENTFGHDTVTHQLIVHAPP 1367


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 476 AFEFPVSGSLITLGVCNI 423
           A  F  +G LITL VC +
Sbjct: 660 AMSFSATGILITLFVCGV 677


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 249 LTCNKGHEHDKTIWKACKSEQSISTSEELGCGSKCVHWKL 368
           + C++    D +  K+     S    ++LGC   CV  KL
Sbjct: 24  ILCSQKAGFDLSDLKSMYESNSEEQMKKLGCFEACVFQKL 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,371
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)