Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40825
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 693 ITPTSSVNDSRRRTTEPLSTN 631
           I  +  + DSR +TTE LST+
Sbjct: 666 IKASDKLKDSRIKTTEKLSTD 686


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 609 CCNDTSSNWCSVA 647
           CCN   +N CS++
Sbjct: 163 CCNSPENNTCSIS 175


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 632 IATCIITAKNKS 597
           ++TC++ A+NKS
Sbjct: 72  VSTCVVIARNKS 83


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 489 FGTGVAINSVCIPSSEVRFPTEFEWWNLSAGSVSR 593
           F     + ++C     V +  EF+W +   GS+S+
Sbjct: 476 FPASFGLLNICYWVIYVTYQEEFKWQDSPLGSISQ 510


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 543 FPTEFEWWNLSAGSVSRTAFIFCCND 620
           F T  EW  L   +V    F  CC++
Sbjct: 200 FYTSVEWDILEVPAVRNEKFYTCCDE 225


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +2

Query: 284 CPNFSIS*CDYGDSWCFRGIC 346
           CP+F+++  +   ++C +G C
Sbjct: 443 CPHFNVTDGETTKTFCCKGYC 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,057
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)