Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40823
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.75 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 395 FPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKATPVMASTWLLYAVRGDVV 565
           F LVT  P+++   +++  +E L   E+ +   +     +K   +    W +    G  V
Sbjct: 269 FELVTVEPILTERPSDRQRNEILLSDELDSV--DDRTLRLKGQMIYMDNWKMMMYLGTPV 326

Query: 566 PKDVNAAIAT 595
             D+NA IAT
Sbjct: 327 MPDLNALIAT 336


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 586 GRVHILGYDVTTYSIQQPCTCHDGGRFHHLVG 491
           G + +LGY   T  IQ+    HD    H+L G
Sbjct: 305 GLLSVLGYKYITPLIQKHLKIHDTCGVHNLHG 336


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 214 MKPSMTSAAVISTLAPN 264
           MKP M  +A + T+ PN
Sbjct: 9   MKPLMEFSATLDTVVPN 25


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 348 TSPSSRLTWCLTPVSTS 398
           TSP+S +  C++P++ S
Sbjct: 582 TSPNSAVRKCMSPINGS 598


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 369 LVWNSVRSTFRAPSNLKEAVIEETICPMRRFRLV*VGR*CRDYGGR 232
           LV  +V S F  PS + +   EE +  + R     +   C++ GG+
Sbjct: 10  LVTANVGSIFEEPSVMLKIWTEEFLSTILRLDPKFIALHCQEVGGK 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,411
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)