Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40821
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.37 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 155 RGREKGRYICSRQKSVKCQSQTSVLTVT 238
           R  + G+Y+C    SV  +S  +VLTVT
Sbjct: 278 RVEDSGKYLCIVNNSVGGESVETVLTVT 305



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 LRGREKGRYICSRQKSVKCQSQTSVLTVTL 241
           +  R  G Y+C+ + +    S ++ LTV +
Sbjct: 648 ITARHAGEYVCTAENAAGTASHSTTLTVNV 677


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 189 REHIYLPFSLPLSLGNLK 136
           R ++YLPF L LS  + +
Sbjct: 257 RSNLYLPFHLTLSFRDFR 274


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 98 AKKVSLLTCVLCTHALCFK 42
          AKK  L TC LC   LC K
Sbjct: 2  AKK--LFTCQLCGKVLCSK 18


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 189 REHIYLPFSLPLSLGNLK 136
           R ++YLPF L LS  + +
Sbjct: 252 RSNLYLPFHLTLSFRDFR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,246
Number of Sequences: 438
Number of extensions: 2886
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)