Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40818
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.23 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 599 LQVWQNALPEPLLLQERPNWT 661
           L  W   +P+P +L+ +P WT
Sbjct: 28  LPSWDGKMPQPCILKPKPLWT 48


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 435 FLVNLFTDFQKYSDIPKEWEPPAPHHSRC 521
           F V L T    Y     EW+PPA + S C
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSC 153


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 441 VNLFTDFQKYSDIPKEWEPPAPHHSRCS 524
           V L T    Y      W+PPA + S CS
Sbjct: 127 VTLMTKATVYYSGLVVWQPPAVYKSSCS 154


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 126 LWVVKI-RFFFKVLFLIVTLRSWIRF 52
           +++ K+ RFFF   FLI+ +  W  F
Sbjct: 357 IYIDKVSRFFFPFSFLILNVVYWSTF 382


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 486 EWEPPAPHHSRC 521
           EW+PPA + S C
Sbjct: 138 EWKPPAIYKSSC 149


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 518  VQSDLQWYLMDPDAYDQFLVGIGTGVA--LQVWQNALPEPLLLQERPNWTETYAVW 679
            V+S   +Y+         LVG GTG+A     W + L E   ++ RP+  E   VW
Sbjct: 952  VRSAPNFYMPSEPKAPMILVGPGTGIAPFRGFWHHRLAE---IKRRPD-LEYGKVW 1003


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 330 NGLTTGYIFLEYSNPQNAAEAVKA 401
           N L   Y F +YSN   A E++ A
Sbjct: 23  NVLDFDYYFYDYSNRTQALESIIA 46


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +2

Query: 629 PLLLQERPNWTETYAVWSPFRN 694
           P  L +  NW   Y  W P  N
Sbjct: 259 PTYLIKWKNWDLKYNTWEPISN 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,218
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)